******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= idk1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ sp|O34580|PCRA_BACSU 1.0000 739 sp|P03018|UVRD_ECOLI 1.0000 720 sp|P09980|REP_ECOLI 1.0000 673 sp|P9WMP9|UVRD2_MYCTU 1.0000 700 sp|P9WMQ1|UVRD1_MYCTU 1.0000 771 sp|Q12039|HMI1_YEAST 1.0000 706 sp|O32215|HELD_BACSU 1.0000 774 sp|P15038|HELD_ECOLI 1.0000 684 sp|P56255|PCRA_GEOSE 1.0000 724 sp|Q02322|UVRD_HAEIN 1.0000 727 sp|Q53727|PCRA_STAA8 1.0000 730 sp|O31626|YJCD_BACSU 1.0000 759 sp|O51889|REP_BUCAP 1.0000 658 sp|P0A5A4|UVRD1_MYCBO 1.0000 771 sp|P0DW48|GAJB_BACC5 1.0000 684 sp|P44804|REP_HAEIN 1.0000 670 sp|P45612|UVRD_MYCCT 1.0000 722 sp|P47486|UVRD_MYCGE 1.0000 703 sp|P53528|UVRD2_MYCLE 1.0000 714 sp|P57654|REP_BUCAI 1.0000 645 sp|P64318|PCRA_STAAM 1.0000 730 sp|P64319|PCRA_STAAN 1.0000 730 sp|P64321|UVRD2_MYCBO 1.0000 700 sp|P75437|UVRD_MYCPN 1.0000 715 sp|P9WMP8|UVRD2_MYCTO 1.0000 700 sp|P9WMQ0|UVRD1_MYCTO 1.0000 771 sp|Q05311|UVRD_SALTY 1.0000 720 sp|Q1RIP8|UVRD_RICBR 1.0000 653 sp|Q4ULN5|UVRD_RICFE 1.0000 654 sp|Q5HEL7|PCRA_STAAC 1.0000 730 sp|Q5HN29|PCRA_STAEQ 1.0000 729 sp|Q68WT1|UVRD_RICTY 1.0000 658 sp|Q6G828|PCRA_STAAS 1.0000 730 sp|Q6GFF2|PCRA_STAAR 1.0000 730 sp|Q89A21|REP_BUCBP 1.0000 670 sp|Q8CRT9|PCRA_STAES 1.0000 729 sp|Q8NVT1|PCRA_STAAW 1.0000 730 sp|Q92HZ6|UVRD_RICCN 1.0000 653 sp|Q9CD72|UVRD1_MYCLE 1.0000 778 sp|Q9L6S1|REP_SALTY 1.0000 674 sp|Q9S3Q0|PCRA_LEUCI 1.0000 749 sp|Q9ZD95|UVRD_RICPR 1.0000 658 sp|Q5UR49|YR568_MIMIV 1.0000 695 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme idk1.fasta -o res -mod anr -minw 4 -maxw 8 -nmotifs 4 model: mod= anr nmotifs= 4 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values width: minw= 4 maxw= 8 nsites: minsites= 2 maxsites= 215 wnsites= 0.8 theta: spmap= pam spfuzz= 120 em: prior= megap b= 152800 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30560 N= 43 sample: seed= 0 hsfrac= 0 searchsize= 30560 norand= no csites= 1000 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.0774 C 0.0072 D 0.0574 E 0.0787 F 0.04 G 0.051 H 0.0201 I 0.0723 K 0.0656 L 0.1 M 0.0233 N 0.0544 P 0.0307 Q 0.0448 R 0.063 S 0.0607 T 0.0507 V 0.0568 W 0.00959 Y 0.036 Background letter frequencies (from file dataset with add-one prior applied): A 0.0773 C 0.00723 D 0.0574 E 0.0787 F 0.04 G 0.051 H 0.0201 I 0.0723 K 0.0656 L 0.1 M 0.0233 N 0.0543 P 0.0307 Q 0.0448 R 0.063 S 0.0607 T 0.0507 V 0.0568 W 0.00961 Y 0.036 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TNKAAREL MEME-1 width = 8 sites = 157 llr = 1806 E-value = 1.1e-230 ******************************************************************************** -------------------------------------------------------------------------------- Motif TNKAAREL MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2551:: pos.-specific C :::::::: probability D :::::::: matrix E ::::::3: F ::::::1: G :::1::3: H ::3::::: I :::::::1 K ::3::3:: L :2:::::6 M :11:::12 N :5:::::: P :::1:::: Q :::11::: R ::1::3:: S 1::23::: T 9::1::1: V ::::::1: W :::::::: Y :::::1:: bits 7.1 6.4 5.7 5.0 Relative 4.3 Entropy 3.6 * (16.6 bits) 2.8 * * 2.1 * * * 1.4 ******** 0.7 ******** 0.0 -------- Multilevel TNKAAREL consensus H SKGM sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNKAAREL MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- sp|Q9ZD95|UVRD_RICPR 67 3.21e-09 LPHNILAVTF TNKAAKEM SERVHNLINC sp|Q9S3Q0|PCRA_LEUCI 63 3.21e-09 FPWRILAITF TNKAAREM RERIAALLSE sp|Q9L6S1|REP_SALTY 56 3.21e-09 QARHIAAVTF TNKAAREM KERVGQTLGR sp|Q92HZ6|UVRD_RICCN 63 3.21e-09 SPQNILAVTF TNKAAKEM AERVNSLINC sp|Q8NVT1|PCRA_STAAW 61 3.21e-09 SPYNVLAITF TNKAAREM KERVQKLVGD sp|Q8CRT9|PCRA_STAES 61 3.21e-09 SPYNILAITF TNKAAKEM KARVEHLVGE sp|Q6GFF2|PCRA_STAAR 61 3.21e-09 SPYNVLAITF TNKAAREM KERVQKLVGD sp|Q6G828|PCRA_STAAS 61 3.21e-09 SPYNVLAITF TNKAAREM KERVQKLVGD sp|Q68WT1|UVRD_RICTY 67 3.21e-09 LPHNILAVTF TNKAAKEM SERVHNLINC sp|Q5HN29|PCRA_STAEQ 61 3.21e-09 SPYNILAITF TNKAAKEM KARVEHLVGE sp|Q5HEL7|PCRA_STAAC 61 3.21e-09 SPYNVLAITF TNKAAREM KERVQKLVGD sp|Q4ULN5|UVRD_RICFE 64 3.21e-09 SPQNILAVTF TNKAAKEM AERVNSLINC sp|Q1RIP8|UVRD_RICBR 63 3.21e-09 SPQNILAVTF TNKAAKEM QERVHNLVSS sp|P64319|PCRA_STAAN 61 3.21e-09 SPYNVLAITF TNKAAREM KERVQKLVGD sp|P64318|PCRA_STAAM 61 3.21e-09 SPYNVLAITF TNKAAREM KERVQKLVGD sp|P45612|UVRD_MYCCT 63 3.21e-09 DPSRILAVTF TNKAAKEM KERVLQITNN sp|P44804|REP_HAEIN 56 3.21e-09 SPKQIAAVTF TNKAAREM KERVAHSIGK sp|Q53727|PCRA_STAA8 61 3.21e-09 SPYNVLAITF TNKAAREM KERVQKLVGD sp|P56255|PCRA_GEOSE 65 3.21e-09 APWNILAITF TNKAAREM RERVQSLLGG sp|P09980|REP_ECOLI 56 3.21e-09 QARHIAAVTF TNKAAREM KERVGQTLGR sp|O34580|PCRA_BACSU 65 3.21e-09 APWNILAITF TNKAAREM KERVESILGP sp|P57654|REP_BUCAI 56 6.01e-09 EPDNIAAVTF TNKAAYEM RIRLSKYLNI sp|Q9ZD95|UVRD_RICPR 558 2.35e-08 TNYGGSVTIM TLHAAKGL EFDVVFLPGW sp|Q9S3Q0|PCRA_LEUCI 564 2.35e-08 EEGDGAVTLM TLHAAKGL EFPVVFLIGL sp|Q9CD72|UVRD1_MYCLE 604 2.35e-08 ENNSGVVTLM TLHAAKGL EFPVVFVTGW sp|Q92HZ6|UVRD_RICCN 553 2.35e-08 TNYGGSVTIM TLHAAKGL EFDVVFLPGW sp|Q89A21|REP_BUCBP 56 2.35e-08 DPKCITAITF TNKAACEM KSRILNVLSV sp|Q68WT1|UVRD_RICTY 558 2.35e-08 TNYGGSVTIM TLHAAKGL EFDVVFLPGW sp|Q4ULN5|UVRD_RICFE 554 2.35e-08 TNYGGSVTIM TLHAAKGL EFDVVFLPGW sp|P56255|PCRA_GEOSE 563 2.35e-08 AAEGDAVMLM TLHAAKGL EFPVVFLIGM sp|O34580|PCRA_BACSU 564 2.35e-08 SGGKDAITLM TLHAAKGL EFPVVFLMGL sp|Q9CD72|UVRD1_MYCLE 242 3.48e-08 RHVLVDEYQD TNHAQYVL VRELVGHGAR sp|P9WMQ0|UVRD1_MYCTO 243 3.48e-08 RHVLVDEYQD TNHAQYVL VRELVGRDSN sp|P0A5A4|UVRD1_MYCBO 243 3.48e-08 RHVLVDEYQD TNHAQYVL VRELVGRDSN sp|P9WMQ1|UVRD1_MYCTU 243 3.48e-08 RHVLVDEYQD TNHAQYVL VRELVGRDSN sp|Q9L6S1|REP_SALTY 556 4.00e-08 EEELDQVQLM TLHASKGL EFPYVYMVGM sp|Q89A21|REP_BUCBP 556 4.00e-08 VINNDYVQLM TLHASKGL EFLYVFIVGV sp|P57654|REP_BUCAI 556 4.00e-08 KEQQDRVQLM TLHASKGL EFPAVFIIGM sp|P44804|REP_HAEIN 557 4.00e-08 DDDSDQVQLM TLHASKGL EFPYVYLIGM sp|P09980|REP_ECOLI 556 4.00e-08 EEELDQVQLM TLHASKGL EFPYVYMVGM sp|Q8NVT1|PCRA_STAAW 554 4.77e-08 ADTENGVTLM TMHSAKGL EFPIVFIMGM sp|Q8CRT9|PCRA_STAES 554 4.77e-08 ADTQNGVTLM TMHSAKGL EFPIVFIMGM sp|Q6GFF2|PCRA_STAAR 554 4.77e-08 ADTENGVTLM TMHSAKGL EFPIVFIMGM sp|Q6G828|PCRA_STAAS 554 4.77e-08 ADTENGVTLM TMHSAKGL EFPIVFIMGM sp|Q5HN29|PCRA_STAEQ 554 4.77e-08 ADTQNGVTLM TMHSAKGL EFPIVFIMGM sp|Q5HEL7|PCRA_STAAC 554 4.77e-08 ADTENGVTLM TMHSAKGL EFPIVFIMGM sp|P64319|PCRA_STAAN 554 4.77e-08 ADTENGVTLM TMHSAKGL EFPIVFIMGM sp|P64318|PCRA_STAAM 554 4.77e-08 ADTENGVTLM TMHSAKGL EFPIVFIMGM sp|Q53727|PCRA_STAA8 554 4.77e-08 ADTENGVTLM TMHSAKGL EFPIVFIMGM sp|Q9CD72|UVRD1_MYCLE 74 8.57e-08 GVSQILAITF TNKAAAEM RERVARLVGD sp|Q05311|UVRD_SALTY 63 8.57e-08 SPYSIMAVTF TNKAAAEM RHRIGQLMGT sp|P9WMQ0|UVRD1_MYCTO 76 8.57e-08 GVGQILAITF TNKAAAEM RERVVGLVGE sp|P0A5A4|UVRD1_MYCBO 76 8.57e-08 GVGQILAITF TNKAAAEM RERVVGLVGE sp|Q02322|UVRD_HAEIN 64 8.57e-08 SEGSIMAVTF TNKAAAEM RHRIQSTLAK sp|P9WMQ1|UVRD1_MYCTU 76 8.57e-08 GVGQILAITF TNKAAAEM RERVVGLVGE sp|P03018|UVRD_ECOLI 63 8.57e-08 SPYSIMAVTF TNKAAAEM RHRIGQLMGT sp|Q05311|UVRD_SALTY 558 9.66e-08 DTWQDAVQLM TLHSAKGL EFPQVFIVGM sp|Q02322|UVRD_HAEIN 562 9.66e-08 SPHQSCVEMM TLHSAKGL EFPRVFMVGV sp|P03018|UVRD_ECOLI 558 9.66e-08 DTWQDAVQLM TLHSAKGL EFPQVFIVGM sp|O51889|REP_BUCAP 558 1.50e-07 EIPKNRVQLM TLHSSKGL EFSSVFIIGM sp|P47486|UVRD_MYCGE 536 1.74e-07 ENSSDTINLL TVHAAKGL EFEAVFIYGM sp|P45612|UVRD_MYCCT 559 1.74e-07 AEQIDKVSLL TVHAAKGL ENKVVFITGL sp|Q8NVT1|PCRA_STAAW 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLASKFKN sp|Q8CRT9|PCRA_STAES 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLANKFKN sp|Q6GFF2|PCRA_STAAR 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLASKFKN sp|Q6G828|PCRA_STAAS 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLASKFKN sp|Q5HN29|PCRA_STAEQ 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLANKFKN sp|Q5HEL7|PCRA_STAAC 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLASKFKN sp|P9WMQ0|UVRD1_MYCTO 597 2.00e-07 EHGAGVVTLM TLHTAKGL EFPVVFVTGW sp|P64319|PCRA_STAAN 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLASKFKN sp|P64318|PCRA_STAAM 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLASKFKN sp|P0A5A4|UVRD1_MYCBO 597 2.00e-07 EHGAGVVTLM TLHTAKGL EFPVVFVTGW sp|Q53727|PCRA_STAA8 224 2.00e-07 QYIHVDEYQD TNKAQYTL VKLLASKFKN sp|P9WMQ1|UVRD1_MYCTU 597 2.00e-07 EHGAGVVTLM TLHTAKGL EFPVVFVTGW sp|Q1RIP8|UVRD_RICBR 553 3.84e-07 TSYGGSVTIM TLHGAKGL EFDVVFLPGW sp|P56255|PCRA_GEOSE 360 4.94e-07 RYRDFAVLYR TNAQSRVM EEMLLKANIP sp|P75437|UVRD_MYCPN 548 5.60e-07 QSKDNVINLI TVHSAKGL EFEAVFIYGI sp|O34580|PCRA_BACSU 228 5.60e-07 QYIHVDEYQD TNRAQYML VKQLAERFQN sp|P47486|UVRD_MYCGE 54 7.13e-07 DPSRILAITF TKKAAKEM QFRILKLIDS sp|P9WMP8|UVRD2_MYCTO 500 7.99e-07 PPVVQGVTLA SLHAAKGL EWDAVFLVGL sp|P64321|UVRD2_MYCBO 500 7.99e-07 PPVVQGVTLA SLHAAKGL EWDAVFLVGL sp|P9WMP9|UVRD2_MYCTU 500 7.99e-07 PPVVQGVTLA SLHAAKGL EWDAVFLVGL sp|Q8NVT1|PCRA_STAAW 355 9.04e-07 KYQDMAILYR TNAQSRVL EETFMKSNMP sp|Q8CRT9|PCRA_STAES 355 9.04e-07 KYSEMAILYR TNAQSRVL EETFMKSNIP sp|Q6GFF2|PCRA_STAAR 355 9.04e-07 KYQDMAILYR TNAQSRVL EETFMKSNMP sp|Q6G828|PCRA_STAAS 355 9.04e-07 KYQDMAILYR TNAQSRVL EETFMKSNMP sp|Q5HN29|PCRA_STAEQ 355 9.04e-07 KYSEMAILYR TNAQSRVL EETFMKSNIP sp|Q5HEL7|PCRA_STAAC 355 9.04e-07 KYQDMAILYR TNAQSRVL EETFMKSNMP sp|P64319|PCRA_STAAN 355 9.04e-07 KYQDMAILYR TNAQSRVL EETFMKSNMP sp|P64318|PCRA_STAAM 355 9.04e-07 KYQDMAILYR TNAQSRVL EETFMKSNMP sp|Q53727|PCRA_STAA8 355 9.04e-07 KYQDMAILYR TNAQSRVL EETFMKSNMP sp|O51889|REP_BUCAP 56 1.02e-06 KPGNIIAVTF TNKAAHEI KVRLAKHLNL sp|P56255|PCRA_GEOSE 228 1.44e-06 QYIHIDEYQD TNRAQYTL VKKLAERFQN sp|P57654|REP_BUCAI 219 1.60e-06 SYLLVDEYQD TNNSQYEL IKMLANKNSD sp|O51889|REP_BUCAP 219 1.60e-06 SYLLVDEYQD TNNSQYEL IKMLTNVNSN sp|Q8NVT1|PCRA_STAAW 611 2.00e-06 ITRAEEVLYI THATSRML FGRPQSNMPS sp|Q6GFF2|PCRA_STAAR 611 2.00e-06 ITRAEEVLYI THATSRML FGRPQSNMPS sp|Q6G828|PCRA_STAAS 611 2.00e-06 ITRAEEVLYI THATSRML FGRPQSNMPS sp|Q5HEL7|PCRA_STAAC 611 2.00e-06 ITRAEEVLYI THATSRML FGRPQSNMPS sp|P64319|PCRA_STAAN 611 2.00e-06 ITRAEEVLYI THATSRML FGRPQSNMPS sp|P64318|PCRA_STAAM 611 2.00e-06 ITRAEEVLYI THATSRML FGRPQSNMPS sp|Q53727|PCRA_STAA8 611 2.00e-06 ITRAEEVLYI THATSRML FGRPQSNMPS sp|Q12039|HMI1_YEAST 587 2.22e-06 TTGPGTVKLS TIHSAKGL EFPIVFLTNG sp|Q9L6S1|REP_SALTY 219 2.76e-06 RYLLVDEYQD TNTSQYEL VKLLVGQRAR sp|P44804|REP_HAEIN 219 2.76e-06 RYLLVDEYQD TNTSQYEL IKLLVGDRAC sp|P09980|REP_ECOLI 219 2.76e-06 RYLLVDEYQD TNTSQYEL VKLLVGSRAR sp|Q8CRT9|PCRA_STAES 611 3.05e-06 ITRAEELLYI TNATTRML FGRSQSNMPS sp|Q5HN29|PCRA_STAEQ 611 3.05e-06 ITRAEELLYI TNATTRML FGRSQSNMPS sp|Q9S3Q0|PCRA_LEUCI 455 5.05e-06 GSIELAPSIT TKAASKFL TFAEMMHNLR sp|P9WMQ0|UVRD1_MYCTO 382 6.13e-06 TYNDVAVFYR TNNSSRSL EEVLIRAGIP sp|P0A5A4|UVRD1_MYCBO 382 6.13e-06 TYNDVAVFYR TNNSSRSL EEVLIRAGIP sp|P9WMQ1|UVRD1_MYCTU 382 6.13e-06 TYNDVAVFYR TNNSSRSL EEVLIRAGIP sp|O34580|PCRA_BACSU 360 6.75e-06 KLSDIAILYR TNAQSRVI EETLLKAGLN sp|Q8NVT1|PCRA_STAAW 624 8.14e-06 TSRMLFGRPQ SNMPSRFL KEIPESLLEN sp|Q8CRT9|PCRA_STAES 624 8.14e-06 TTRMLFGRSQ SNMPSRFL KEIPEDLLDS sp|Q6GFF2|PCRA_STAAR 624 8.14e-06 TSRMLFGRPQ SNMPSRFL KEIPESLLEN sp|Q6G828|PCRA_STAAS 624 8.14e-06 TSRMLFGRPQ SNMPSRFL KEIPESLLEN sp|Q5HN29|PCRA_STAEQ 624 8.14e-06 TTRMLFGRSQ SNMPSRFL KEIPEDLLDS sp|Q5HEL7|PCRA_STAAC 624 8.14e-06 TSRMLFGRPQ SNMPSRFL KEIPESLLEN sp|P64319|PCRA_STAAN 624 8.14e-06 TSRMLFGRPQ SNMPSRFL KEIPESLLEN sp|P64318|PCRA_STAAM 624 8.14e-06 TSRMLFGRPQ SNMPSRFL KEIPESLLEN sp|Q53727|PCRA_STAA8 624 8.14e-06 TSRMLFGRPQ SNMPSRFL KEIPESLLEN sp|P9WMP8|UVRD2_MYCTO 65 1.07e-05 AAGQVLAVTF TQRAAGEM RSRLRALDAA sp|P64321|UVRD2_MYCBO 65 1.07e-05 AAGQVLAVTF TQRAAGEM RSRLRALDAA sp|P53528|UVRD2_MYCLE 65 1.07e-05 ATGQVLAVTF TQRAAAEM RSRLRALGAA sp|P9WMP9|UVRD2_MYCTU 65 1.07e-05 AAGQVLAVTF TQRAAGEM RSRLRALDAA sp|P75437|UVRD_MYCPN 62 1.28e-05 NPSNILALTY TRKAASEM KQRILELLPE sp|Q5UR49|YR568_MIMIV 403 1.40e-05 DRIPGHINLL TYHGTKGL EFDTVFVMDF sp|P9WMP8|UVRD2_MYCTO 272 1.98e-05 GDANQTIYSF TGASPRFL LDFSRRFPDA sp|P64321|UVRD2_MYCBO 272 1.98e-05 GDANQTIYSF TGASPRFL LDFSRRFPDA sp|P9WMP9|UVRD2_MYCTU 272 1.98e-05 GDANQTIYSF TGASPRFL LDFSRRFPDA sp|P9WMQ0|UVRD1_MYCTO 335 3.52e-05 NAGRREKRLW TDAGAGEL IVGYVADNEH sp|P0A5A4|UVRD1_MYCBO 335 3.52e-05 NAGRREKRLW TDAGAGEL IVGYVADNEH sp|P9WMQ1|UVRD1_MYCTU 335 3.52e-05 NAGRREKRLW TDAGAGEL IVGYVADNEH sp|Q9S3Q0|PCRA_LEUCI 619 4.12e-05 ITRAMKKLFL TNAFSRLL YGRTQANEPS sp|P53528|UVRD2_MYCLE 275 4.46e-05 GDANQTIYSF TGASPCFL LDFPRRFPDA sp|Q9S3Q0|PCRA_LEUCI 359 4.81e-05 AYSDFAVLYR TNAQSRNI EESLVKANMP sp|O31626|YJCD_BACSU 189 4.81e-05 PPENMLLVTF TTKAVAEM KERMANQYGL sp|P0DW48|GAJB_BACC5 73 5.61e-05 HNQQIICITY TNVATKEV KERLGNTDLV sp|O31626|YJCD_BACSU 166 1.16e-04 GAGSGKTRVL TARAAHMI EHLGIPPENM sp|Q9L6S1|REP_SALTY 33 2.12e-04 GAGSGKTRVI TNKIAHLI RGCGYQARHI sp|P09980|REP_ECOLI 33 2.12e-04 GAGSGKTRVI TNKIAHLI RGCGYQARHI sp|P53528|UVRD2_MYCLE 618 2.42e-04 LRCRICKNDL TTPAAVML QRCQICAADV sp|O31626|YJCD_BACSU 739 2.93e-04 LSCPANRRGK TANRSRFL YPLLQKARQP sp|Q12039|HMI1_YEAST 60 2.93e-04 KPEEILIFSL TNKAVDSI IENLLSIFEN sp|Q12039|HMI1_YEAST 238 3.32e-04 KGKQLIMFGD TNQSIYGF LGSNNEIMSQ sp|O32215|HELD_BACSU 350 5.71e-04 SFQQFINEYV TRLSSEGM IFKNIIFRGQ sp|O32215|HELD_BACSU 755 6.06e-04 RAMHMLAVFY TGEASPFV TAVPPHLYQI sp|Q12039|HMI1_YEAST 301 6.80e-04 PLAEKQIIDD TDETPSEL VRKLPSGVSP sp|O32215|HELD_BACSU 392 9.03e-04 LDQNHSIPNR MEQTAKWL LSELNKLEKK sp|O32215|HELD_BACSU 606 1.26e-03 EPAEYVRLKR TYRSTRQI VEFTKAMLQD sp|O31626|YJCD_BACSU 483 1.32e-03 SPEDFAVLYR TNSGGRAI YERLHQSSIP sp|Q9CD72|UVRD1_MYCLE 180 1.64e-03 ESAVANLSSD TDDLARTV ATVYGEYQRR sp|O31626|YJCD_BACSU 35 2.12e-03 FEEGIKGHLF CSHCGKPV LLRLNIADPP sp|Q05311|UVRD_SALTY 80 2.59e-03 MRHRIGQLMG TSQGGMWV GTFHGLAHRL sp|P03018|UVRD_ECOLI 80 2.59e-03 MRHRIGQLMG TSQGGMWV GTFHGLAHRL sp|P0DW48|GAJB_BACC5 373 6.09e-03 EGGSVKFYKG TSGNVKDL IERYIYEWKI -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNKAAREL MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sp|Q9ZD95|UVRD_RICPR 2.3e-08 66_[1]_483_[1]_93 sp|Q9S3Q0|PCRA_LEUCI 4.8e-05 62_[1]_288_[1]_88_[1]_101_[1]_47_ [1]_123 sp|Q9L6S1|REP_SALTY 2.8e-06 32_[1]_15_[1]_155_[1]_329_[1]_111 sp|Q92HZ6|UVRD_RICCN 2.3e-08 62_[1]_482_[1]_93 sp|Q8NVT1|PCRA_STAAW 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_99 sp|Q8CRT9|PCRA_STAES 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_98 sp|Q6GFF2|PCRA_STAAR 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_99 sp|Q6G828|PCRA_STAAS 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_99 sp|Q68WT1|UVRD_RICTY 2.3e-08 66_[1]_483_[1]_93 sp|Q5HN29|PCRA_STAEQ 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_98 sp|Q5HEL7|PCRA_STAAC 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_99 sp|Q4ULN5|UVRD_RICFE 2.3e-08 63_[1]_482_[1]_93 sp|Q1RIP8|UVRD_RICBR 3.8e-07 62_[1]_482_[1]_93 sp|P64319|PCRA_STAAN 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_99 sp|P64318|PCRA_STAAM 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_99 sp|P45612|UVRD_MYCCT 1.7e-07 62_[1]_488_[1]_156 sp|P44804|REP_HAEIN 2.8e-06 55_[1]_155_[1]_330_[1]_106 sp|Q53727|PCRA_STAA8 2e-07 60_[1]_155_[1]_123_[1]_191_[1]_ 49_[1]_5_[1]_99 sp|P56255|PCRA_GEOSE 1.4e-06 64_[1]_155_[1]_124_[1]_195_[1]_154 sp|P09980|REP_ECOLI 2.8e-06 32_[1]_15_[1]_155_[1]_329_[1]_110 sp|O34580|PCRA_BACSU 5.6e-07 64_[1]_155_[1]_124_[1]_196_[1]_168 sp|P57654|REP_BUCAI 1.6e-06 55_[1]_155_[1]_329_[1]_82 sp|Q9CD72|UVRD1_MYCLE 3.5e-08 73_[1]_98_[1]_54_[1]_354_[1]_167 sp|Q89A21|REP_BUCBP 4e-08 55_[1]_492_[1]_107 sp|P9WMQ0|UVRD1_MYCTO 3.5e-08 75_[1]_159_[1]_84_[1]_39_[1]_207_ [1]_167 sp|P0A5A4|UVRD1_MYCBO 3.5e-08 75_[1]_159_[1]_84_[1]_39_[1]_207_ [1]_167 sp|P9WMQ1|UVRD1_MYCTU 3.5e-08 75_[1]_159_[1]_84_[1]_39_[1]_207_ [1]_167 sp|Q05311|UVRD_SALTY 0.0026 62_[1]_9_[1]_470_[1]_155 sp|Q02322|UVRD_HAEIN 9.7e-08 63_[1]_490_[1]_158 sp|P03018|UVRD_ECOLI 0.0026 62_[1]_9_[1]_470_[1]_155 sp|O51889|REP_BUCAP 1.6e-06 55_[1]_155_[1]_331_[1]_93 sp|P47486|UVRD_MYCGE 1.7e-07 53_[1]_474_[1]_160 sp|P75437|UVRD_MYCPN 1.3e-05 61_[1]_478_[1]_160 sp|P9WMP8|UVRD2_MYCTO 8e-07 64_[1]_199_[1]_220_[1]_193 sp|P64321|UVRD2_MYCBO 8e-07 64_[1]_199_[1]_220_[1]_193 sp|P9WMP9|UVRD2_MYCTU 8e-07 64_[1]_199_[1]_220_[1]_193 sp|Q12039|HMI1_YEAST 0.00033 59_[1]_170_[1]_55_[1]_278_[1]_112 sp|P53528|UVRD2_MYCLE 4.5e-05 64_[1]_202_[1]_335_[1]_89 sp|Q5UR49|YR568_MIMIV 1.4e-05 402_[1]_285 sp|O31626|YJCD_BACSU 0.00029 34_[1]_123_[1]_15_[1]_286_[1]_248_ [1]_13 sp|P0DW48|GAJB_BACC5 0.0061 72_[1]_292_[1]_304 sp|O32215|HELD_BACSU 0.00057 349_[1]_34_[1]_206_[1]_141_[1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNKAAREL MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TNKAAREL width=8 seqs=157 sp|Q9ZD95|UVRD_RICPR ( 67) TNKAAKEM 1 sp|Q9S3Q0|PCRA_LEUCI ( 63) TNKAAREM 1 sp|Q9L6S1|REP_SALTY ( 56) TNKAAREM 1 sp|Q92HZ6|UVRD_RICCN ( 63) TNKAAKEM 1 sp|Q8NVT1|PCRA_STAAW ( 61) TNKAAREM 1 sp|Q8CRT9|PCRA_STAES ( 61) TNKAAKEM 1 sp|Q6GFF2|PCRA_STAAR ( 61) TNKAAREM 1 sp|Q6G828|PCRA_STAAS ( 61) TNKAAREM 1 sp|Q68WT1|UVRD_RICTY ( 67) TNKAAKEM 1 sp|Q5HN29|PCRA_STAEQ ( 61) TNKAAKEM 1 sp|Q5HEL7|PCRA_STAAC ( 61) TNKAAREM 1 sp|Q4ULN5|UVRD_RICFE ( 64) TNKAAKEM 1 sp|Q1RIP8|UVRD_RICBR ( 63) TNKAAKEM 1 sp|P64319|PCRA_STAAN ( 61) TNKAAREM 1 sp|P64318|PCRA_STAAM ( 61) TNKAAREM 1 sp|P45612|UVRD_MYCCT ( 63) TNKAAKEM 1 sp|P44804|REP_HAEIN ( 56) TNKAAREM 1 sp|Q53727|PCRA_STAA8 ( 61) TNKAAREM 1 sp|P56255|PCRA_GEOSE ( 65) TNKAAREM 1 sp|P09980|REP_ECOLI ( 56) TNKAAREM 1 sp|O34580|PCRA_BACSU ( 65) TNKAAREM 1 sp|P57654|REP_BUCAI ( 56) TNKAAYEM 1 sp|Q9ZD95|UVRD_RICPR ( 558) TLHAAKGL 1 sp|Q9S3Q0|PCRA_LEUCI ( 564) TLHAAKGL 1 sp|Q9CD72|UVRD1_MYCLE ( 604) TLHAAKGL 1 sp|Q92HZ6|UVRD_RICCN ( 553) TLHAAKGL 1 sp|Q89A21|REP_BUCBP ( 56) TNKAACEM 1 sp|Q68WT1|UVRD_RICTY ( 558) TLHAAKGL 1 sp|Q4ULN5|UVRD_RICFE ( 554) TLHAAKGL 1 sp|P56255|PCRA_GEOSE ( 563) TLHAAKGL 1 sp|O34580|PCRA_BACSU ( 564) TLHAAKGL 1 sp|Q9CD72|UVRD1_MYCLE ( 242) TNHAQYVL 1 sp|P9WMQ0|UVRD1_MYCTO ( 243) TNHAQYVL 1 sp|P0A5A4|UVRD1_MYCBO ( 243) TNHAQYVL 1 sp|P9WMQ1|UVRD1_MYCTU ( 243) TNHAQYVL 1 sp|Q9L6S1|REP_SALTY ( 556) TLHASKGL 1 sp|Q89A21|REP_BUCBP ( 556) TLHASKGL 1 sp|P57654|REP_BUCAI ( 556) TLHASKGL 1 sp|P44804|REP_HAEIN ( 557) TLHASKGL 1 sp|P09980|REP_ECOLI ( 556) TLHASKGL 1 sp|Q8NVT1|PCRA_STAAW ( 554) TMHSAKGL 1 sp|Q8CRT9|PCRA_STAES ( 554) TMHSAKGL 1 sp|Q6GFF2|PCRA_STAAR ( 554) TMHSAKGL 1 sp|Q6G828|PCRA_STAAS ( 554) TMHSAKGL 1 sp|Q5HN29|PCRA_STAEQ ( 554) TMHSAKGL 1 sp|Q5HEL7|PCRA_STAAC ( 554) TMHSAKGL 1 sp|P64319|PCRA_STAAN ( 554) TMHSAKGL 1 sp|P64318|PCRA_STAAM ( 554) TMHSAKGL 1 sp|Q53727|PCRA_STAA8 ( 554) TMHSAKGL 1 sp|Q9CD72|UVRD1_MYCLE ( 74) TNKAAAEM 1 sp|Q05311|UVRD_SALTY ( 63) TNKAAAEM 1 sp|P9WMQ0|UVRD1_MYCTO ( 76) TNKAAAEM 1 sp|P0A5A4|UVRD1_MYCBO ( 76) TNKAAAEM 1 sp|Q02322|UVRD_HAEIN ( 64) TNKAAAEM 1 sp|P9WMQ1|UVRD1_MYCTU ( 76) TNKAAAEM 1 sp|P03018|UVRD_ECOLI ( 63) TNKAAAEM 1 sp|Q05311|UVRD_SALTY ( 558) TLHSAKGL 1 sp|Q02322|UVRD_HAEIN ( 562) TLHSAKGL 1 sp|P03018|UVRD_ECOLI ( 558) TLHSAKGL 1 sp|O51889|REP_BUCAP ( 558) TLHSSKGL 1 sp|P47486|UVRD_MYCGE ( 536) TVHAAKGL 1 sp|P45612|UVRD_MYCCT ( 559) TVHAAKGL 1 sp|Q8NVT1|PCRA_STAAW ( 224) TNKAQYTL 1 sp|Q8CRT9|PCRA_STAES ( 224) TNKAQYTL 1 sp|Q6GFF2|PCRA_STAAR ( 224) TNKAQYTL 1 sp|Q6G828|PCRA_STAAS ( 224) TNKAQYTL 1 sp|Q5HN29|PCRA_STAEQ ( 224) TNKAQYTL 1 sp|Q5HEL7|PCRA_STAAC ( 224) TNKAQYTL 1 sp|P9WMQ0|UVRD1_MYCTO ( 597) TLHTAKGL 1 sp|P64319|PCRA_STAAN ( 224) TNKAQYTL 1 sp|P64318|PCRA_STAAM ( 224) TNKAQYTL 1 sp|P0A5A4|UVRD1_MYCBO ( 597) TLHTAKGL 1 sp|Q53727|PCRA_STAA8 ( 224) TNKAQYTL 1 sp|P9WMQ1|UVRD1_MYCTU ( 597) TLHTAKGL 1 sp|Q1RIP8|UVRD_RICBR ( 553) TLHGAKGL 1 sp|P56255|PCRA_GEOSE ( 360) TNAQSRVM 1 sp|P75437|UVRD_MYCPN ( 548) TVHSAKGL 1 sp|O34580|PCRA_BACSU ( 228) TNRAQYML 1 sp|P47486|UVRD_MYCGE ( 54) TKKAAKEM 1 sp|P9WMP8|UVRD2_MYCTO ( 500) SLHAAKGL 1 sp|P64321|UVRD2_MYCBO ( 500) SLHAAKGL 1 sp|P9WMP9|UVRD2_MYCTU ( 500) SLHAAKGL 1 sp|Q8NVT1|PCRA_STAAW ( 355) TNAQSRVL 1 sp|Q8CRT9|PCRA_STAES ( 355) TNAQSRVL 1 sp|Q6GFF2|PCRA_STAAR ( 355) TNAQSRVL 1 sp|Q6G828|PCRA_STAAS ( 355) TNAQSRVL 1 sp|Q5HN29|PCRA_STAEQ ( 355) TNAQSRVL 1 sp|Q5HEL7|PCRA_STAAC ( 355) TNAQSRVL 1 sp|P64319|PCRA_STAAN ( 355) TNAQSRVL 1 sp|P64318|PCRA_STAAM ( 355) TNAQSRVL 1 sp|Q53727|PCRA_STAA8 ( 355) TNAQSRVL 1 sp|O51889|REP_BUCAP ( 56) TNKAAHEI 1 sp|P56255|PCRA_GEOSE ( 228) TNRAQYTL 1 sp|P57654|REP_BUCAI ( 219) TNNSQYEL 1 sp|O51889|REP_BUCAP ( 219) TNNSQYEL 1 sp|Q8NVT1|PCRA_STAAW ( 611) THATSRML 1 sp|Q6GFF2|PCRA_STAAR ( 611) THATSRML 1 sp|Q6G828|PCRA_STAAS ( 611) THATSRML 1 sp|Q5HEL7|PCRA_STAAC ( 611) THATSRML 1 sp|P64319|PCRA_STAAN ( 611) THATSRML 1 sp|P64318|PCRA_STAAM ( 611) THATSRML 1 sp|Q53727|PCRA_STAA8 ( 611) THATSRML 1 sp|Q12039|HMI1_YEAST ( 587) TIHSAKGL 1 sp|Q9L6S1|REP_SALTY ( 219) TNTSQYEL 1 sp|P44804|REP_HAEIN ( 219) TNTSQYEL 1 sp|P09980|REP_ECOLI ( 219) TNTSQYEL 1 sp|Q8CRT9|PCRA_STAES ( 611) TNATTRML 1 sp|Q5HN29|PCRA_STAEQ ( 611) TNATTRML 1 sp|Q9S3Q0|PCRA_LEUCI ( 455) TKAASKFL 1 sp|P9WMQ0|UVRD1_MYCTO ( 382) TNNSSRSL 1 sp|P0A5A4|UVRD1_MYCBO ( 382) TNNSSRSL 1 sp|P9WMQ1|UVRD1_MYCTU ( 382) TNNSSRSL 1 sp|O34580|PCRA_BACSU ( 360) TNAQSRVI 1 sp|Q8NVT1|PCRA_STAAW ( 624) SNMPSRFL 1 sp|Q8CRT9|PCRA_STAES ( 624) SNMPSRFL 1 sp|Q6GFF2|PCRA_STAAR ( 624) SNMPSRFL 1 sp|Q6G828|PCRA_STAAS ( 624) SNMPSRFL 1 sp|Q5HN29|PCRA_STAEQ ( 624) SNMPSRFL 1 sp|Q5HEL7|PCRA_STAAC ( 624) SNMPSRFL 1 sp|P64319|PCRA_STAAN ( 624) SNMPSRFL 1 sp|P64318|PCRA_STAAM ( 624) SNMPSRFL 1 sp|Q53727|PCRA_STAA8 ( 624) SNMPSRFL 1 sp|P9WMP8|UVRD2_MYCTO ( 65) TQRAAGEM 1 sp|P64321|UVRD2_MYCBO ( 65) TQRAAGEM 1 sp|P53528|UVRD2_MYCLE ( 65) TQRAAAEM 1 sp|P9WMP9|UVRD2_MYCTU ( 65) TQRAAGEM 1 sp|P75437|UVRD_MYCPN ( 62) TRKAASEM 1 sp|Q5UR49|YR568_MIMIV ( 403) TYHGTKGL 1 sp|P9WMP8|UVRD2_MYCTO ( 272) TGASPRFL 1 sp|P64321|UVRD2_MYCBO ( 272) TGASPRFL 1 sp|P9WMP9|UVRD2_MYCTU ( 272) TGASPRFL 1 sp|P9WMQ0|UVRD1_MYCTO ( 335) TDAGAGEL 1 sp|P0A5A4|UVRD1_MYCBO ( 335) TDAGAGEL 1 sp|P9WMQ1|UVRD1_MYCTU ( 335) TDAGAGEL 1 sp|Q9S3Q0|PCRA_LEUCI ( 619) TNAFSRLL 1 sp|P53528|UVRD2_MYCLE ( 275) TGASPCFL 1 sp|Q9S3Q0|PCRA_LEUCI ( 359) TNAQSRNI 1 sp|O31626|YJCD_BACSU ( 189) TTKAVAEM 1 sp|P0DW48|GAJB_BACC5 ( 73) TNVATKEV 1 sp|O31626|YJCD_BACSU ( 166) TARAAHMI 1 sp|Q9L6S1|REP_SALTY ( 33) TNKIAHLI 1 sp|P09980|REP_ECOLI ( 33) TNKIAHLI 1 sp|P53528|UVRD2_MYCLE ( 618) TTPAAVML 1 sp|O31626|YJCD_BACSU ( 739) TANRSRFL 1 sp|Q12039|HMI1_YEAST ( 60) TNKAVDSI 1 sp|Q12039|HMI1_YEAST ( 238) TNQSIYGF 1 sp|O32215|HELD_BACSU ( 350) TRLSSEGM 1 sp|O32215|HELD_BACSU ( 755) TGEASPFV 1 sp|Q12039|HMI1_YEAST ( 301) TDETPSEL 1 sp|O32215|HELD_BACSU ( 392) MEQTAKWL 1 sp|O32215|HELD_BACSU ( 606) TYRSTRQI 1 sp|O31626|YJCD_BACSU ( 483) TNSGGRAI 1 sp|Q9CD72|UVRD1_MYCLE ( 180) TDDLARTV 1 sp|O31626|YJCD_BACSU ( 35) CSHCGKPV 1 sp|Q05311|UVRD_SALTY ( 80) TSQGGMWV 1 sp|P03018|UVRD_ECOLI ( 80) TSQGGMWV 1 sp|P0DW48|GAJB_BACC5 ( 373) TSGNVKDL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNKAAREL MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 30259 bayes= 7.81475 E= 1.1e-230 -515 -16 -658 -718 -654 -626 -585 -589 -617 -680 -181 -507 -594 -584 -631 38 414 -498 -612 -700 -224 -442 -79 -279 -570 -67 113 -332 -189 55 125 323 -456 -67 -201 -109 -172 -151 -531 -146 127 -443 -267 -217 -571 -268 370 -596 211 -363 125 -46 -206 -67 -28 -254 -124 -285 -532 -520 277 11 -547 -527 -260 -11 -476 -248 -507 -351 -387 -303 64 52 -318 147 61 -299 -463 -543 266 -429 -896 -919 -849 -96 -808 -348 -917 -873 -763 -794 5 149 -867 214 -64 -154 -811 -895 -40 79 -270 -283 -582 -42 36 -605 229 -568 -83 -423 -208 -359 239 -190 -404 -287 -540 190 -299 -370 -289 191 131 227 -424 -463 -436 -219 168 -277 -213 -242 -488 -115 47 75 95 -513 -820 -613 -1107 -1056 -244 -980 -857 -30 -1018 269 340 -1033 -872 -856 -959 -971 -784 -54 -657 -749 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNKAAREL MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 157 E= 1.1e-230 0.000000 0.006369 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.006369 0.000000 0.000000 0.000000 0.000000 0.076433 0.910828 0.000000 0.000000 0.000000 0.012739 0.000000 0.031847 0.006369 0.000000 0.031847 0.044586 0.006369 0.012739 0.152866 0.057325 0.535032 0.000000 0.025478 0.012739 0.025478 0.012739 0.019108 0.000000 0.012739 0.191083 0.000000 0.006369 0.012739 0.000000 0.006369 0.273885 0.000000 0.292994 0.006369 0.057325 0.038217 0.006369 0.025478 0.050955 0.006369 0.019108 0.006369 0.000000 0.000000 0.490446 0.006369 0.000000 0.000000 0.006369 0.050955 0.000000 0.012739 0.000000 0.006369 0.000000 0.006369 0.057325 0.076433 0.006369 0.191083 0.089172 0.000000 0.000000 0.000000 0.490446 0.000000 0.000000 0.000000 0.000000 0.025478 0.000000 0.006369 0.000000 0.000000 0.000000 0.000000 0.031847 0.127389 0.000000 0.267516 0.031847 0.019108 0.000000 0.000000 0.057325 0.012739 0.006369 0.006369 0.000000 0.038217 0.025478 0.000000 0.331210 0.000000 0.012739 0.000000 0.006369 0.000000 0.343949 0.012739 0.000000 0.006369 0.000000 0.140127 0.006369 0.000000 0.006369 0.305732 0.101911 0.254777 0.000000 0.000000 0.000000 0.019108 0.076433 0.006369 0.006369 0.006369 0.000000 0.025478 0.070064 0.095541 0.019108 0.000000 0.000000 0.000000 0.000000 0.000000 0.006369 0.000000 0.000000 0.057325 0.000000 0.649682 0.248408 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.038217 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNKAAREL MEME-1 regular expression -------------------------------------------------------------------------------- TN[KH]A[AS][RK][EG][LM] -------------------------------------------------------------------------------- Time 69.97 secs. ******************************************************************************** ******************************************************************************** MOTIF YIVVDEYQ MEME-2 width = 8 sites = 87 llr = 1266 E-value = 6.1e-200 ******************************************************************************** -------------------------------------------------------------------------------- Motif YIVVDEYQ MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 31:::::: probability D ::::913: matrix E :::::6:: F ::::::1: G :::3:::: H 1:1::::: I :3:2:::: K 1::::::: L :23::::: M :::::::: N :::::::: P :::::::: Q :::::::a R :::::::: S :::::1:: T :::::::: V :354:::: W :::::::: Y 3::1::5: bits 7.1 6.4 5.7 5.0 Relative 4.3 * Entropy 3.6 * * (21.0 bits) 2.8 * * ** 2.1 * ****** 1.4 ******** 0.7 ******** 0.0 -------- Multilevel YIVVDEYQ consensus CVLG D sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YIVVDEYQ MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- sp|P9WMP8|UVRD2_MYCTO 231 6.67e-10 VAEEFQDRYR CFVVDEYQ DVTPLQQRVL sp|P64321|UVRD2_MYCBO 231 6.67e-10 VAEEFQDRYR CFVVDEYQ DVTPLQQRVL sp|P53528|UVRD2_MYCLE 234 6.67e-10 VAEEFRDRYR CFVVDEYQ DVTPLQQRVL sp|P9WMP9|UVRD2_MYCTU 231 6.67e-10 VAEEFQDRYR CFVVDEYQ DVTPLQQRVL sp|Q8NVT1|PCRA_STAAW 215 8.26e-10 VLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|Q8CRT9|PCRA_STAES 215 8.26e-10 TLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|Q6GFF2|PCRA_STAAR 215 8.26e-10 VLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|Q6G828|PCRA_STAAS 215 8.26e-10 VLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|Q5HN29|PCRA_STAEQ 215 8.26e-10 TLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|Q5HEL7|PCRA_STAAC 215 8.26e-10 VLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|P64319|PCRA_STAAN 215 8.26e-10 VLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|P64318|PCRA_STAAM 215 8.26e-10 VLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|Q53727|PCRA_STAA8 215 8.26e-10 VLEYYQNKFQ YIHVDEYQ DTNKAQYTLV sp|O34580|PCRA_BACSU 219 8.26e-10 VLEFYQRKFQ YIHVDEYQ DTNRAQYMLV sp|Q9ZD95|UVRD_RICPR 251 8.48e-10 RMLASLYRNI CCVGDDDQ SIYGWRGAEV sp|Q92HZ6|UVRD_RICCN 246 8.48e-10 RMLASLYKNI CCVGDDDQ SIYGWRGAEV sp|Q68WT1|UVRD_RICTY 251 8.48e-10 RMLASLYRNI CCVGDDDQ SIYGWRGAEV sp|Q4ULN5|UVRD_RICFE 247 8.48e-10 RMLASLYKNI CCVGDDDQ SIYGWRGAEV sp|Q1RIP8|UVRD_RICBR 246 8.48e-10 RMLASLSKNI CCVGDDDQ SIYGWRGAEV sp|O31626|YJCD_BACSU 371 8.48e-10 QMLASPEQNL CCVGDDDQ SIYAFRGSNP sp|Q9S3Q0|PCRA_LEUCI 218 3.45e-09 VLARYQQQFE YLHVDEYQ DTNDAQYTIV sp|Q8NVT1|PCRA_STAAW 243 3.85e-09 KLLASKFKNL CVVGDSDQ SIYGWRGADI sp|Q8CRT9|PCRA_STAES 243 3.85e-09 KLLANKFKNL CVVGDSDQ SIYGWRGADI sp|Q6GFF2|PCRA_STAAR 243 3.85e-09 KLLASKFKNL CVVGDSDQ SIYGWRGADI sp|Q6G828|PCRA_STAAS 243 3.85e-09 KLLASKFKNL CVVGDSDQ SIYGWRGADI sp|Q5HN29|PCRA_STAEQ 243 3.85e-09 KLLANKFKNL CVVGDSDQ SIYGWRGADI sp|Q5HEL7|PCRA_STAAC 243 3.85e-09 KLLASKFKNL CVVGDSDQ SIYGWRGADI sp|P64319|PCRA_STAAN 243 3.85e-09 KLLASKFKNL CVVGDSDQ SIYGWRGADI sp|P64318|PCRA_STAAM 243 3.85e-09 KLLASKFKNL CVVGDSDQ SIYGWRGADI sp|Q53727|PCRA_STAA8 243 3.85e-09 KLLASKFKNL CVVGDSDQ SIYGWRGADI sp|P56255|PCRA_GEOSE 219 3.85e-09 VLHYYQYKFQ YIHIDEYQ DTNRAQYTLV sp|O34580|PCRA_BACSU 247 3.85e-09 KQLAERFQNL CVVGDSDQ SIYRWRGADI sp|Q9CD72|UVRD1_MYCLE 233 5.26e-09 IAEHYRRRFR HVLVDEYQ DTNHAQYVLV sp|P9WMQ0|UVRD1_MYCTO 234 5.26e-09 IAQYYRRRFR HVLVDEYQ DTNHAQYVLV sp|P0A5A4|UVRD1_MYCBO 234 5.26e-09 IAQYYRRRFR HVLVDEYQ DTNHAQYVLV sp|P9WMQ1|UVRD1_MYCTU 234 5.26e-09 IAQYYRRRFR HVLVDEYQ DTNHAQYVLV sp|Q9L6S1|REP_SALTY 210 8.62e-09 VRERWQNKIR YLLVDEYQ DTNTSQYELV sp|Q89A21|REP_BUCBP 207 8.62e-09 SRERWNDKIK YLLVDEYQ DTNFIQYKLI sp|P57654|REP_BUCAI 210 8.62e-09 IKIRWQKKIS YLLVDEYQ DTNNSQYELI sp|P44804|REP_HAEIN 210 8.62e-09 VRSKWQAKIR YLLVDEYQ DTNTSQYELI sp|O51889|REP_BUCAP 210 8.62e-09 IQNRWQKKIS YLLVDEYQ DTNNSQYELI sp|P09980|REP_ECOLI 210 8.62e-09 VRKRWQNKIR YLLVDEYQ DTNTSQYELV sp|Q9ZD95|UVRD_RICPR 223 9.89e-09 VLKYYQEKYR YILIDEYQ DTNIAQYLWA sp|Q92HZ6|UVRD_RICCN 218 9.89e-09 ILRYYQEKYR YILIDEYQ DTNVVQYLWA sp|Q68WT1|UVRD_RICTY 223 9.89e-09 ILKYYQEKYR YILIDEYQ DTNIAQYLWA sp|Q4ULN5|UVRD_RICFE 219 9.89e-09 ILRYYQEKYR YILIDEYQ DTNVVQYLWA sp|Q1RIP8|UVRD_RICBR 218 9.89e-09 ILKHYQERYR YILIDEYQ DTNVVQYLWA sp|Q9CD72|UVRD1_MYCLE 271 1.43e-08 SPDDMPPGEL CVVGDADQ SIYAFRGSTI sp|P9WMQ0|UVRD1_MYCTO 269 1.43e-08 SNDGIPPGEL CVVGDADQ SIYAFRGATI sp|P0A5A4|UVRD1_MYCBO 269 1.43e-08 SNDGIPPGEL CVVGDADQ SIYAFRGATI sp|P9WMQ1|UVRD1_MYCTU 269 1.43e-08 SNDGIPPGEL CVVGDADQ SIYAFRGATI sp|P45612|UVRD_MYCCT 221 1.64e-08 ILNKWRNAYD YVLVDEFQ DTNELQFSLI sp|P75437|UVRD_MYCPN 223 1.91e-08 LLRKWSKKFQ YILGDEFQ DTNQIQYELI sp|P47486|UVRD_MYCGE 215 3.30e-08 LLNQWSEQFQ HILVDEFQ DTNQIQYELI sp|Q02322|UVRD_HAEIN 221 3.30e-08 ILQRYQQRFQ HILVDEFQ DTNKIQYKWI sp|P15038|HELD_ECOLI 433 3.30e-08 EKGRFISPWK HILVDEFQ DISPQRAALL sp|O31626|YJCD_BACSU 343 5.79e-08 LLEQYQSRFT YILIDEFQ DINPVQYKIM sp|Q05311|UVRD_SALTY 244 7.73e-08 RLLAGDTGKV MIVGDDDQ SIYGWRGAQV sp|Q02322|UVRD_HAEIN 249 7.73e-08 KILAGKTGQV MIVGDDDQ SIYGWRGAQI sp|P03018|UVRD_ECOLI 244 7.73e-08 RLLAGDTGKV MIVGDDDQ SIYGWRGAQV sp|Q9L6S1|REP_SALTY 238 1.98e-07 KLLVGQRARF TVVGDDDQ SIYSWRGARP sp|P44804|REP_HAEIN 238 1.98e-07 KLLVGDRACF TVVGDDDQ SIYSWRGARP sp|P09980|REP_ECOLI 238 1.98e-07 KLLVGSRARF TVVGDDDQ SIYSWRGARP sp|P9WMQ0|UVRD1_MYCTO 189 3.58e-07 EDSDDLARAV ASVYDEYQ RRLRAANALD sp|P0A5A4|UVRD1_MYCBO 189 3.58e-07 EDSDDLARAV ASVYDEYQ RRLRAANALD sp|P9WMQ1|UVRD1_MYCTU 189 3.58e-07 EDSDDLARAV ASVYDEYQ RRLRAANALD sp|Q05311|UVRD_SALTY 216 4.31e-07 ILQHYRERFT NILVDEFQ DTNNIQYAWV sp|P0DW48|GAJB_BACC5 267 4.31e-07 LKQIIIDKYP FIFIDEYQ DTDEKVILIM sp|P03018|UVRD_ECOLI 216 4.31e-07 ILQHYRERFT NILVDEFQ DTNNIQYAWI sp|Q12039|HMI1_YEAST 206 8.30e-07 FTQDLRNKYK VVLIDEFQ DLYPSLAPLI sp|Q9ZD95|UVRD_RICPR 178 2.48e-06 DTNLPLQKIA KLVYEEYQ KNLLISNVLD sp|Q92HZ6|UVRD_RICCN 173 2.48e-06 DTNLPLQRVA KLVYEEYQ KNLLISNVLD sp|Q4ULN5|UVRD_RICFE 174 2.48e-06 DTNLPLQRVA KLVYEEYQ KNLLISNVLD sp|Q1RIP8|UVRD_RICBR 173 2.48e-06 DTNLPLQRVA KLVYEEYQ QNLLISNVVD sp|Q5UR49|YR568_MIMIV 220 4.21e-06 NSITKFKIIK HLFIDEAQ DLNNIQFDIA sp|O32215|HELD_BACSU 542 4.21e-06 EGRKKNTKIK HLFIDEAQ DYSPFQMAYM sp|P56255|PCRA_GEOSE 171 8.59e-06 FAKRASTYYE KVVSDVYQ EYQQRLLRNH sp|P15038|HELD_ECOLI 463 9.21e-06 LRKQNSQTTL FAVGDDWQ AIYRFSGAQM sp|Q5UR49|YR568_MIMIV 659 1.82e-05 KIDIRDTYNR YLQPDKYQ YNYNNIIFDL sp|Q9S3Q0|PCRA_LEUCI 196 8.81e-05 SQSVDFDDLI MLTIDLFQ SAPDVLARYQ sp|Q5UR49|YR568_MIMIV 678 1.12e-04 NYNNIIFDLF YLVVVQYA YDINHYIYIK sp|Q05311|UVRD_SALTY 129 1.18e-04 QMRLLKRLIK AMNLDEKQ WPPRQAMWYI sp|P03018|UVRD_ECOLI 129 1.18e-04 QLRLLKRLIK AMNLDEKQ WPPRQAMWYI sp|P15038|HELD_ECOLI 538 1.41e-04 NSLTNGDKKA VTLLDESQ LDALLDKLSG sp|P75437|UVRD_MYCPN 455 2.23e-04 LDKILQNLEQ AIFLDEHT RGELTEAAKV sp|P0DW48|GAJB_BACC5 259 2.95e-04 KIIKKYDLLK QIIIDKYP FIFIDEYQDT sp|P15038|HELD_ECOLI 604 6.92e-04 IHASKGQQAD YVIIVGLQ EGSDGFPAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YIVVDEYQ MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sp|P9WMP8|UVRD2_MYCTO 6.7e-10 230_[2]_462 sp|P64321|UVRD2_MYCBO 6.7e-10 230_[2]_462 sp|P53528|UVRD2_MYCLE 6.7e-10 233_[2]_473 sp|P9WMP9|UVRD2_MYCTU 6.7e-10 230_[2]_462 sp|Q8NVT1|PCRA_STAAW 3.8e-09 214_[2]_20_[2]_480 sp|Q8CRT9|PCRA_STAES 3.8e-09 214_[2]_20_[2]_479 sp|Q6GFF2|PCRA_STAAR 3.8e-09 214_[2]_20_[2]_480 sp|Q6G828|PCRA_STAAS 3.8e-09 214_[2]_20_[2]_480 sp|Q5HN29|PCRA_STAEQ 3.8e-09 214_[2]_20_[2]_479 sp|Q5HEL7|PCRA_STAAC 3.8e-09 214_[2]_20_[2]_480 sp|P64319|PCRA_STAAN 3.8e-09 214_[2]_20_[2]_480 sp|P64318|PCRA_STAAM 3.8e-09 214_[2]_20_[2]_480 sp|Q53727|PCRA_STAA8 3.8e-09 214_[2]_20_[2]_480 sp|O34580|PCRA_BACSU 3.8e-09 218_[2]_20_[2]_485 sp|Q9ZD95|UVRD_RICPR 2.5e-06 177_[2]_37_[2]_20_[2]_400 sp|Q92HZ6|UVRD_RICCN 2.5e-06 172_[2]_37_[2]_20_[2]_400 sp|Q68WT1|UVRD_RICTY 8.5e-10 222_[2]_20_[2]_400 sp|Q4ULN5|UVRD_RICFE 2.5e-06 173_[2]_37_[2]_20_[2]_400 sp|Q1RIP8|UVRD_RICBR 2.5e-06 172_[2]_37_[2]_20_[2]_400 sp|O31626|YJCD_BACSU 8.5e-10 342_[2]_20_[2]_381 sp|Q9S3Q0|PCRA_LEUCI 8.8e-05 195_[2]_14_[2]_524 sp|P56255|PCRA_GEOSE 8.6e-06 170_[2]_40_[2]_498 sp|Q9CD72|UVRD1_MYCLE 1.4e-08 232_[2]_30_[2]_500 sp|P9WMQ0|UVRD1_MYCTO 1.4e-08 188_[2]_37_[2]_27_[2]_495 sp|P0A5A4|UVRD1_MYCBO 1.4e-08 188_[2]_37_[2]_27_[2]_495 sp|P9WMQ1|UVRD1_MYCTU 1.4e-08 188_[2]_37_[2]_27_[2]_495 sp|Q9L6S1|REP_SALTY 2e-07 209_[2]_20_[2]_429 sp|Q89A21|REP_BUCBP 8.6e-09 206_[2]_456 sp|P57654|REP_BUCAI 8.6e-09 209_[2]_428 sp|P44804|REP_HAEIN 2e-07 209_[2]_20_[2]_425 sp|O51889|REP_BUCAP 8.6e-09 209_[2]_441 sp|P09980|REP_ECOLI 2e-07 209_[2]_20_[2]_428 sp|P45612|UVRD_MYCCT 1.6e-08 220_[2]_494 sp|P75437|UVRD_MYCPN 0.00022 222_[2]_224_[2]_253 sp|P47486|UVRD_MYCGE 3.3e-08 214_[2]_481 sp|Q02322|UVRD_HAEIN 7.7e-08 220_[2]_20_[2]_471 sp|P15038|HELD_ECOLI 0.00069 432_[2]_22_[2]_67_[2]_58_[2]_73 sp|Q05311|UVRD_SALTY 0.00012 128_[2]_79_[2]_20_[2]_469 sp|P03018|UVRD_ECOLI 0.00012 128_[2]_79_[2]_20_[2]_469 sp|P0DW48|GAJB_BACC5 0.00029 258_[2]_[2]_410 sp|Q12039|HMI1_YEAST 8.3e-07 205_[2]_493 sp|Q5UR49|YR568_MIMIV 0.00011 219_[2]_431_[2]_11_[2]_10 sp|O32215|HELD_BACSU 4.2e-06 541_[2]_225 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YIVVDEYQ MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YIVVDEYQ width=8 seqs=87 sp|P9WMP8|UVRD2_MYCTO ( 231) CFVVDEYQ 1 sp|P64321|UVRD2_MYCBO ( 231) CFVVDEYQ 1 sp|P53528|UVRD2_MYCLE ( 234) CFVVDEYQ 1 sp|P9WMP9|UVRD2_MYCTU ( 231) CFVVDEYQ 1 sp|Q8NVT1|PCRA_STAAW ( 215) YIHVDEYQ 1 sp|Q8CRT9|PCRA_STAES ( 215) YIHVDEYQ 1 sp|Q6GFF2|PCRA_STAAR ( 215) YIHVDEYQ 1 sp|Q6G828|PCRA_STAAS ( 215) YIHVDEYQ 1 sp|Q5HN29|PCRA_STAEQ ( 215) YIHVDEYQ 1 sp|Q5HEL7|PCRA_STAAC ( 215) YIHVDEYQ 1 sp|P64319|PCRA_STAAN ( 215) YIHVDEYQ 1 sp|P64318|PCRA_STAAM ( 215) YIHVDEYQ 1 sp|Q53727|PCRA_STAA8 ( 215) YIHVDEYQ 1 sp|O34580|PCRA_BACSU ( 219) YIHVDEYQ 1 sp|Q9ZD95|UVRD_RICPR ( 251) CCVGDDDQ 1 sp|Q92HZ6|UVRD_RICCN ( 246) CCVGDDDQ 1 sp|Q68WT1|UVRD_RICTY ( 251) CCVGDDDQ 1 sp|Q4ULN5|UVRD_RICFE ( 247) CCVGDDDQ 1 sp|Q1RIP8|UVRD_RICBR ( 246) CCVGDDDQ 1 sp|O31626|YJCD_BACSU ( 371) CCVGDDDQ 1 sp|Q9S3Q0|PCRA_LEUCI ( 218) YLHVDEYQ 1 sp|Q8NVT1|PCRA_STAAW ( 243) CVVGDSDQ 1 sp|Q8CRT9|PCRA_STAES ( 243) CVVGDSDQ 1 sp|Q6GFF2|PCRA_STAAR ( 243) CVVGDSDQ 1 sp|Q6G828|PCRA_STAAS ( 243) CVVGDSDQ 1 sp|Q5HN29|PCRA_STAEQ ( 243) CVVGDSDQ 1 sp|Q5HEL7|PCRA_STAAC ( 243) CVVGDSDQ 1 sp|P64319|PCRA_STAAN ( 243) CVVGDSDQ 1 sp|P64318|PCRA_STAAM ( 243) CVVGDSDQ 1 sp|Q53727|PCRA_STAA8 ( 243) CVVGDSDQ 1 sp|P56255|PCRA_GEOSE ( 219) YIHIDEYQ 1 sp|O34580|PCRA_BACSU ( 247) CVVGDSDQ 1 sp|Q9CD72|UVRD1_MYCLE ( 233) HVLVDEYQ 1 sp|P9WMQ0|UVRD1_MYCTO ( 234) HVLVDEYQ 1 sp|P0A5A4|UVRD1_MYCBO ( 234) HVLVDEYQ 1 sp|P9WMQ1|UVRD1_MYCTU ( 234) HVLVDEYQ 1 sp|Q9L6S1|REP_SALTY ( 210) YLLVDEYQ 1 sp|Q89A21|REP_BUCBP ( 207) YLLVDEYQ 1 sp|P57654|REP_BUCAI ( 210) YLLVDEYQ 1 sp|P44804|REP_HAEIN ( 210) YLLVDEYQ 1 sp|O51889|REP_BUCAP ( 210) YLLVDEYQ 1 sp|P09980|REP_ECOLI ( 210) YLLVDEYQ 1 sp|Q9ZD95|UVRD_RICPR ( 223) YILIDEYQ 1 sp|Q92HZ6|UVRD_RICCN ( 218) YILIDEYQ 1 sp|Q68WT1|UVRD_RICTY ( 223) YILIDEYQ 1 sp|Q4ULN5|UVRD_RICFE ( 219) YILIDEYQ 1 sp|Q1RIP8|UVRD_RICBR ( 218) YILIDEYQ 1 sp|Q9CD72|UVRD1_MYCLE ( 271) CVVGDADQ 1 sp|P9WMQ0|UVRD1_MYCTO ( 269) CVVGDADQ 1 sp|P0A5A4|UVRD1_MYCBO ( 269) CVVGDADQ 1 sp|P9WMQ1|UVRD1_MYCTU ( 269) CVVGDADQ 1 sp|P45612|UVRD_MYCCT ( 221) YVLVDEFQ 1 sp|P75437|UVRD_MYCPN ( 223) YILGDEFQ 1 sp|P47486|UVRD_MYCGE ( 215) HILVDEFQ 1 sp|Q02322|UVRD_HAEIN ( 221) HILVDEFQ 1 sp|P15038|HELD_ECOLI ( 433) HILVDEFQ 1 sp|O31626|YJCD_BACSU ( 343) YILIDEFQ 1 sp|Q05311|UVRD_SALTY ( 244) MIVGDDDQ 1 sp|Q02322|UVRD_HAEIN ( 249) MIVGDDDQ 1 sp|P03018|UVRD_ECOLI ( 244) MIVGDDDQ 1 sp|Q9L6S1|REP_SALTY ( 238) TVVGDDDQ 1 sp|P44804|REP_HAEIN ( 238) TVVGDDDQ 1 sp|P09980|REP_ECOLI ( 238) TVVGDDDQ 1 sp|P9WMQ0|UVRD1_MYCTO ( 189) ASVYDEYQ 1 sp|P0A5A4|UVRD1_MYCBO ( 189) ASVYDEYQ 1 sp|P9WMQ1|UVRD1_MYCTU ( 189) ASVYDEYQ 1 sp|Q05311|UVRD_SALTY ( 216) NILVDEFQ 1 sp|P0DW48|GAJB_BACC5 ( 267) FIFIDEYQ 1 sp|P03018|UVRD_ECOLI ( 216) NILVDEFQ 1 sp|Q12039|HMI1_YEAST ( 206) VVLIDEFQ 1 sp|Q9ZD95|UVRD_RICPR ( 178) KLVYEEYQ 1 sp|Q92HZ6|UVRD_RICCN ( 173) KLVYEEYQ 1 sp|Q4ULN5|UVRD_RICFE ( 174) KLVYEEYQ 1 sp|Q1RIP8|UVRD_RICBR ( 173) KLVYEEYQ 1 sp|Q5UR49|YR568_MIMIV ( 220) HLFIDEAQ 1 sp|O32215|HELD_BACSU ( 542) HLFIDEAQ 1 sp|P56255|PCRA_GEOSE ( 171) KVVSDVYQ 1 sp|P15038|HELD_ECOLI ( 463) FAVGDDWQ 1 sp|Q5UR49|YR568_MIMIV ( 659) YLQPDKYQ 1 sp|Q9S3Q0|PCRA_LEUCI ( 196) MLTIDLFQ 1 sp|Q5UR49|YR568_MIMIV ( 678) YLVVVQYA 1 sp|Q05311|UVRD_SALTY ( 129) AMNLDEKQ 1 sp|P03018|UVRD_ECOLI ( 129) AMNLDEKQ 1 sp|P15038|HELD_ECOLI ( 538) VTLLDESQ 1 sp|P75437|UVRD_MYCPN ( 455) AIFLDEHT 1 sp|P0DW48|GAJB_BACC5 ( 259) QIIIDKYP 1 sp|P15038|HELD_ECOLI ( 604) YVIIVGLQ 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YIVVDEYQ MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 30259 bayes= 7.97487 E= 6.1e-200 -16 514 -533 -499 -54 -477 227 -336 -24 -357 97 -124 -456 -182 -478 -395 -49 -94 -349 315 -228 319 -644 -598 21 -508 -445 215 -548 86 11 -545 -496 -510 -545 -78 -176 230 -399 -429 -395 -247 -646 -600 21 -510 270 -129 -550 148 -276 -125 -498 -189 -546 -438 -176 296 -399 -430 -413 -265 -668 -623 -396 259 -472 115 -574 -97 -299 -570 -139 -536 -571 -218 -382 265 -425 111 -414 -314 396 -92 -494 -410 -314 -522 -479 -533 -452 -191 -470 -431 -490 -382 -434 -198 -425 -463 -74 -732 138 296 -822 -210 -530 -737 -142 -310 -611 -554 -528 -165 -602 88 -539 -226 -771 -737 -163 -221 209 -457 162 -448 -19 -419 -160 -262 -321 -440 -396 -430 -436 -204 -391 -356 32 378 -235 -324 -607 -421 -635 -486 -259 -634 -543 -545 -412 -506 -147 438 -491 -412 -207 -527 -499 -640 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YIVVDEYQ MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 87 E= 6.1e-200 0.068966 0.275862 0.000000 0.000000 0.022989 0.000000 0.103448 0.000000 0.057471 0.000000 0.045977 0.022989 0.000000 0.011494 0.000000 0.000000 0.034483 0.022989 0.000000 0.333333 0.011494 0.068966 0.000000 0.000000 0.045977 0.000000 0.000000 0.333333 0.000000 0.183908 0.022989 0.000000 0.000000 0.000000 0.000000 0.034483 0.011494 0.287356 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.045977 0.000000 0.137931 0.022989 0.000000 0.287356 0.000000 0.022989 0.000000 0.011494 0.000000 0.000000 0.011494 0.459770 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.321839 0.000000 0.160920 0.000000 0.045977 0.000000 0.000000 0.011494 0.000000 0.000000 0.011494 0.000000 0.367816 0.000000 0.080460 0.000000 0.000000 0.931034 0.045977 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.022989 0.000000 0.000000 0.045977 0.000000 0.149425 0.620690 0.000000 0.011494 0.000000 0.000000 0.022989 0.011494 0.000000 0.000000 0.000000 0.011494 0.000000 0.114943 0.000000 0.011494 0.000000 0.000000 0.022989 0.000000 0.298851 0.000000 0.114943 0.000000 0.011494 0.000000 0.022989 0.011494 0.000000 0.000000 0.000000 0.000000 0.000000 0.011494 0.000000 0.000000 0.011494 0.494253 0.011494 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.011494 0.965517 0.000000 0.000000 0.011494 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YIVVDEYQ MEME-2 regular expression -------------------------------------------------------------------------------- [YC][IV][VL][VG]DE[YD]Q -------------------------------------------------------------------------------- Time 118.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AYVGITRA MEME-3 width = 8 sites = 73 llr = 1217 E-value = 1.1e-225 ******************************************************************************** -------------------------------------------------------------------------------- Motif AYVGITRA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7::2:::6 pos.-specific C 1::::::: probability D :::::::: matrix E :::::::: F :::::::: G :4:7:::: H :::::::: I ::::5::: K ::::4::: L 1:::1::: M :::::::: N :::::::: P :::::::: Q :::::::: R ::::::a: S ::3::::: T ::1::9:1 V ::6:1::3 W :::::::: Y :6:::::: bits 7.1 6.4 5.7 5.0 Relative 4.3 Entropy 3.6 * ** (24.1 bits) 2.8 **** ** 2.1 ******** 1.4 ******** 0.7 ******** 0.0 -------- Multilevel AYVGITRA consensus GSAK V sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYVGITRA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- sp|Q9ZD95|UVRD_RICPR 601 1.81e-10 EKGLEEERRI AYVGITRA KKDLYITHAE sp|Q9S3Q0|PCRA_LEUCI 605 1.81e-10 EDLLEEERRL AYVGITRA MKKLFLTNAF sp|Q9L6S1|REP_SALTY 596 1.81e-10 EDNIEEERRL AYVGITRA QKELTFTLCK sp|Q9CD72|UVRD1_MYCLE 645 1.81e-10 PTELSEERRL AYVGITRA RQRLYLSRAI sp|Q92HZ6|UVRD_RICCN 596 1.81e-10 EKGLEEERRI AYVGITRA KKDLYITHAE sp|Q89A21|REP_BUCBP 597 1.81e-10 ENNIDEERRL AYVGITRA QKKLFLSYAI sp|Q68WT1|UVRD_RICTY 601 1.81e-10 EKGLEEERRI AYVGITRA KKDLYITHAE sp|Q4ULN5|UVRD_RICFE 597 1.81e-10 EKGLEEERRI AYVGITRA KKDLYITHAE sp|Q1RIP8|UVRD_RICBR 596 1.81e-10 EKGLEEERRI AYVGITRA KKELYITHAE sp|P9WMQ0|UVRD1_MYCTO 638 1.81e-10 PTELSEERRL AYVGITRA RQRLYVSRAI sp|P44804|REP_HAEIN 597 1.81e-10 EDNVEEERRL AYVGITRA QKELTFSLCR sp|P0A5A4|UVRD1_MYCBO 638 1.81e-10 PTELSEERRL AYVGITRA RQRLYVSRAI sp|Q02322|UVRD_HAEIN 603 1.81e-10 PGRLEEERRL AYVGITRA KKKLTISYAE sp|P56255|PCRA_GEOSE 604 1.81e-10 DDEMEEERRL AYVGITRA EEELVLTSAQ sp|P9WMQ1|UVRD1_MYCTU 638 1.81e-10 PTELSEERRL AYVGITRA RQRLYVSRAI sp|P09980|REP_ECOLI 596 1.81e-10 EDNIDEERRL AYVGITRA QKELTFTLCK sp|O34580|PCRA_BACSU 605 1.81e-10 EAEMEEERRL AYVGITRA EQELYLTNAK sp|Q8NVT1|PCRA_STAAW 597 1.57e-09 DHEMQEERRI CYVAITRA EEVLYITHAT sp|Q8CRT9|PCRA_STAES 597 1.57e-09 DHEMEEERRI CYVAITRA EELLYITNAT sp|Q6GFF2|PCRA_STAAR 597 1.57e-09 DHEMQEERRI CYVAITRA EEVLYITHAT sp|Q6G828|PCRA_STAAS 597 1.57e-09 DHEMQEERRI CYVAITRA EEVLYITHAT sp|Q5HN29|PCRA_STAEQ 597 1.57e-09 DHEMEEERRI CYVAITRA EELLYITNAT sp|Q5HEL7|PCRA_STAAC 597 1.57e-09 DHEMQEERRI CYVAITRA EEVLYITHAT sp|P64319|PCRA_STAAN 597 1.57e-09 DHEMQEERRI CYVAITRA EEVLYITHAT sp|P64318|PCRA_STAAM 597 1.57e-09 DHEMQEERRI CYVAITRA EEVLYITHAT sp|Q53727|PCRA_STAA8 597 1.57e-09 DHEMQEERRI CYVAITRA EEVLYITHAT sp|Q05311|UVRD_SALTY 599 2.44e-09 GGRLEEERRL AYVGVTRA MQKLTLTYAE sp|P03018|UVRD_ECOLI 599 2.44e-09 GGRLEEERRL AYVGVTRA MQKLTLTYAE sp|P9WMP8|UVRD2_MYCTO 544 3.13e-09 SEPVEEERRL LYVGITRA RVHLALSWAL sp|P64321|UVRD2_MYCBO 544 3.13e-09 SEPVEEERRL LYVGITRA RVHLALSWAL sp|P53528|UVRD2_MYCLE 551 3.13e-09 SEPVEEERRL LYVGITRA RVYLALSWAL sp|Q12039|HMI1_YEAST 616 3.13e-09 MSNFPMDTNA LYVGITRA RNLLYMCNMK sp|P9WMP9|UVRD2_MYCTU 544 3.13e-09 SEPVEEERRL LYVGITRA RVHLALSWAL sp|Q9S3Q0|PCRA_LEUCI 31 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAHLVQ sp|Q9L6S1|REP_SALTY 24 4.83e-09 VTGPCLVLAG AGSGKTRV ITNKIAHLIR sp|Q8NVT1|PCRA_STAAW 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|Q8CRT9|PCRA_STAES 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|Q89A21|REP_BUCBP 24 4.83e-09 ISGPCLILAG AGSGKTRV IINKIVHLIK sp|Q6GFF2|PCRA_STAAR 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|Q6G828|PCRA_STAAS 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|Q5HN29|PCRA_STAEQ 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|Q5HEL7|PCRA_STAAC 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|Q05311|UVRD_SALTY 31 4.83e-09 PRSNMLVLAG AGSGKTRV LVHRIAWLLS sp|P64319|PCRA_STAAN 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|P64318|PCRA_STAAM 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|P45612|UVRD_MYCCT 31 4.83e-09 IDKPVRIIAG AGSGKTRV ITTKIAYLIE sp|P44804|REP_HAEIN 24 4.83e-09 VTGPCLVLAG AGSGKTRV IINKIAHLIE sp|O31626|YJCD_BACSU 157 4.83e-09 TEGPLLVLAG AGSGKTRV LTARAAHMIE sp|Q53727|PCRA_STAA8 29 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLLD sp|Q02322|UVRD_HAEIN 32 4.83e-09 PLGNHLVLAG AGSGKTRV LTHRIAWLIA sp|P56255|PCRA_GEOSE 33 4.83e-09 TEGPLLIMAG AGSGKTRV LTHRIAYLMA sp|P09980|REP_ECOLI 24 4.83e-09 VTGPCLVLAG AGSGKTRV ITNKIAHLIR sp|P03018|UVRD_ECOLI 31 4.83e-09 PRSNLLVLAG AGSGKTRV LVHRIAWLMS sp|O34580|PCRA_BACSU 33 4.83e-09 TDGPLLLMAG AGSGKTRV LTHRIAYLMA sp|P57654|REP_BUCAI 596 7.61e-09 NDNIEEERRL TYVGITRA KKQLFFTYCY sp|O51889|REP_BUCAP 598 3.43e-08 NDNIEEERRL TYVGMTRA RKELFFTYCQ sp|P47486|UVRD_MYCGE 579 3.91e-08 EQHLIDELKL FYVAITRA KRFLFITAVL sp|Q5UR49|YR568_MIMIV 109 6.26e-08 ETTDTKLIAC AGSGKTRS VIGRIKFMVE sp|P9WMP8|UVRD2_MYCTO 33 6.77e-08 PRGPVCVLAG AGTGKTRT ITHRIASLVA sp|P64321|UVRD2_MYCBO 33 6.77e-08 PRGPVCVLAG AGTGKTRT ITHRIASLVA sp|P53528|UVRD2_MYCLE 33 6.77e-08 PRGPVCVLAG AGTGKTRT ITHRIAHLVG sp|P9WMP9|UVRD2_MYCTU 33 6.77e-08 PRGPVCVLAG AGTGKTRT ITHRIASLVA sp|O31626|YJCD_BACSU 716 8.22e-08 EAALEEERRL LYVAMTRA KQHLYLSCPA sp|P45612|UVRD_MYCCT 600 1.48e-07 INELEEERRA LYVALTRA KDELFLTYVK sp|O32215|HELD_BACSU 739 1.71e-07 HYHTEHDRRL LYTACTRA MHMLAVFYTG sp|P75437|UVRD_MYCPN 591 2.62e-07 LQRELDELRL FYVALTRA KKYLFLLSVY sp|P15038|HELD_ECOLI 646 2.62e-07 DFPDAEERRL MYVALTRA RHRVWALFNK sp|P0DW48|GAJB_BACC5 648 1.83e-06 KLNFEKIKNL LYVSCSRA IKNLRVLYID sp|Q9S3Q0|PCRA_LEUCI 650 1.95e-06 AEISPELLET AYSGLSRD KTQKKTLPFD sp|Q5UR49|YR568_MIMIV 441 2.07e-06 YEEHNINQYL LYVATSRA ISKMFICTYI sp|O31626|YJCD_BACSU 648 1.65e-05 KKFKTIPDFL AHVDHMRA AEKNRTDEHG sp|Q1RIP8|UVRD_RICBR 479 1.05e-04 SNWHERFSFD APINVTKA ILDDSGYLEM sp|O34580|PCRA_BACSU 722 1.05e-04 EGTELDIAFP SPVGVKRL LAAFAPIEKQ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYVGITRA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sp|Q9ZD95|UVRD_RICPR 1.8e-10 600_[3]_50 sp|Q9S3Q0|PCRA_LEUCI 4.8e-09 30_[3]_566_[3]_37_[3]_92 sp|Q9L6S1|REP_SALTY 4.8e-09 23_[3]_564_[3]_71 sp|Q9CD72|UVRD1_MYCLE 1.8e-10 644_[3]_126 sp|Q92HZ6|UVRD_RICCN 1.8e-10 595_[3]_50 sp|Q89A21|REP_BUCBP 4.8e-09 23_[3]_565_[3]_66 sp|Q68WT1|UVRD_RICTY 1.8e-10 600_[3]_50 sp|Q4ULN5|UVRD_RICFE 1.8e-10 596_[3]_50 sp|Q1RIP8|UVRD_RICBR 0.0001 478_[3]_109_[3]_50 sp|P9WMQ0|UVRD1_MYCTO 1.8e-10 637_[3]_126 sp|P44804|REP_HAEIN 4.8e-09 23_[3]_565_[3]_66 sp|P0A5A4|UVRD1_MYCBO 1.8e-10 637_[3]_126 sp|Q02322|UVRD_HAEIN 4.8e-09 31_[3]_563_[3]_117 sp|P56255|PCRA_GEOSE 4.8e-09 32_[3]_563_[3]_113 sp|P9WMQ1|UVRD1_MYCTU 1.8e-10 637_[3]_126 sp|P09980|REP_ECOLI 4.8e-09 23_[3]_564_[3]_70 sp|O34580|PCRA_BACSU 4.8e-09 32_[3]_564_[3]_109_[3]_10 sp|Q8NVT1|PCRA_STAAW 4.8e-09 28_[3]_560_[3]_126 sp|Q8CRT9|PCRA_STAES 4.8e-09 28_[3]_560_[3]_125 sp|Q6GFF2|PCRA_STAAR 4.8e-09 28_[3]_560_[3]_126 sp|Q6G828|PCRA_STAAS 4.8e-09 28_[3]_560_[3]_126 sp|Q5HN29|PCRA_STAEQ 4.8e-09 28_[3]_560_[3]_125 sp|Q5HEL7|PCRA_STAAC 4.8e-09 28_[3]_560_[3]_126 sp|P64319|PCRA_STAAN 4.8e-09 28_[3]_560_[3]_126 sp|P64318|PCRA_STAAM 4.8e-09 28_[3]_560_[3]_126 sp|Q53727|PCRA_STAA8 4.8e-09 28_[3]_560_[3]_126 sp|Q05311|UVRD_SALTY 4.8e-09 30_[3]_560_[3]_114 sp|P03018|UVRD_ECOLI 4.8e-09 30_[3]_560_[3]_114 sp|P9WMP8|UVRD2_MYCTO 6.8e-08 32_[3]_503_[3]_149 sp|P64321|UVRD2_MYCBO 6.8e-08 32_[3]_503_[3]_149 sp|P53528|UVRD2_MYCLE 6.8e-08 32_[3]_510_[3]_156 sp|Q12039|HMI1_YEAST 3.1e-09 615_[3]_83 sp|P9WMP9|UVRD2_MYCTU 6.8e-08 32_[3]_503_[3]_149 sp|P45612|UVRD_MYCCT 4.8e-09 30_[3]_561_[3]_115 sp|O31626|YJCD_BACSU 4.8e-09 156_[3]_483_[3]_60_[3]_36 sp|P57654|REP_BUCAI 7.6e-09 595_[3]_42 sp|O51889|REP_BUCAP 3.4e-08 597_[3]_53 sp|P47486|UVRD_MYCGE 3.9e-08 578_[3]_117 sp|Q5UR49|YR568_MIMIV 6.3e-08 108_[3]_324_[3]_247 sp|O32215|HELD_BACSU 1.7e-07 738_[3]_28 sp|P75437|UVRD_MYCPN 2.6e-07 590_[3]_117 sp|P15038|HELD_ECOLI 2.6e-07 645_[3]_31 sp|P0DW48|GAJB_BACC5 1.8e-06 647_[3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYVGITRA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AYVGITRA width=8 seqs=73 sp|Q9ZD95|UVRD_RICPR ( 601) AYVGITRA 1 sp|Q9S3Q0|PCRA_LEUCI ( 605) AYVGITRA 1 sp|Q9L6S1|REP_SALTY ( 596) AYVGITRA 1 sp|Q9CD72|UVRD1_MYCLE ( 645) AYVGITRA 1 sp|Q92HZ6|UVRD_RICCN ( 596) AYVGITRA 1 sp|Q89A21|REP_BUCBP ( 597) AYVGITRA 1 sp|Q68WT1|UVRD_RICTY ( 601) AYVGITRA 1 sp|Q4ULN5|UVRD_RICFE ( 597) AYVGITRA 1 sp|Q1RIP8|UVRD_RICBR ( 596) AYVGITRA 1 sp|P9WMQ0|UVRD1_MYCTO ( 638) AYVGITRA 1 sp|P44804|REP_HAEIN ( 597) AYVGITRA 1 sp|P0A5A4|UVRD1_MYCBO ( 638) AYVGITRA 1 sp|Q02322|UVRD_HAEIN ( 603) AYVGITRA 1 sp|P56255|PCRA_GEOSE ( 604) AYVGITRA 1 sp|P9WMQ1|UVRD1_MYCTU ( 638) AYVGITRA 1 sp|P09980|REP_ECOLI ( 596) AYVGITRA 1 sp|O34580|PCRA_BACSU ( 605) AYVGITRA 1 sp|Q8NVT1|PCRA_STAAW ( 597) CYVAITRA 1 sp|Q8CRT9|PCRA_STAES ( 597) CYVAITRA 1 sp|Q6GFF2|PCRA_STAAR ( 597) CYVAITRA 1 sp|Q6G828|PCRA_STAAS ( 597) CYVAITRA 1 sp|Q5HN29|PCRA_STAEQ ( 597) CYVAITRA 1 sp|Q5HEL7|PCRA_STAAC ( 597) CYVAITRA 1 sp|P64319|PCRA_STAAN ( 597) CYVAITRA 1 sp|P64318|PCRA_STAAM ( 597) CYVAITRA 1 sp|Q53727|PCRA_STAA8 ( 597) CYVAITRA 1 sp|Q05311|UVRD_SALTY ( 599) AYVGVTRA 1 sp|P03018|UVRD_ECOLI ( 599) AYVGVTRA 1 sp|P9WMP8|UVRD2_MYCTO ( 544) LYVGITRA 1 sp|P64321|UVRD2_MYCBO ( 544) LYVGITRA 1 sp|P53528|UVRD2_MYCLE ( 551) LYVGITRA 1 sp|Q12039|HMI1_YEAST ( 616) LYVGITRA 1 sp|P9WMP9|UVRD2_MYCTU ( 544) LYVGITRA 1 sp|Q9S3Q0|PCRA_LEUCI ( 31) AGSGKTRV 1 sp|Q9L6S1|REP_SALTY ( 24) AGSGKTRV 1 sp|Q8NVT1|PCRA_STAAW ( 29) AGSGKTRV 1 sp|Q8CRT9|PCRA_STAES ( 29) AGSGKTRV 1 sp|Q89A21|REP_BUCBP ( 24) AGSGKTRV 1 sp|Q6GFF2|PCRA_STAAR ( 29) AGSGKTRV 1 sp|Q6G828|PCRA_STAAS ( 29) AGSGKTRV 1 sp|Q5HN29|PCRA_STAEQ ( 29) AGSGKTRV 1 sp|Q5HEL7|PCRA_STAAC ( 29) AGSGKTRV 1 sp|Q05311|UVRD_SALTY ( 31) AGSGKTRV 1 sp|P64319|PCRA_STAAN ( 29) AGSGKTRV 1 sp|P64318|PCRA_STAAM ( 29) AGSGKTRV 1 sp|P45612|UVRD_MYCCT ( 31) AGSGKTRV 1 sp|P44804|REP_HAEIN ( 24) AGSGKTRV 1 sp|O31626|YJCD_BACSU ( 157) AGSGKTRV 1 sp|Q53727|PCRA_STAA8 ( 29) AGSGKTRV 1 sp|Q02322|UVRD_HAEIN ( 32) AGSGKTRV 1 sp|P56255|PCRA_GEOSE ( 33) AGSGKTRV 1 sp|P09980|REP_ECOLI ( 24) AGSGKTRV 1 sp|P03018|UVRD_ECOLI ( 31) AGSGKTRV 1 sp|O34580|PCRA_BACSU ( 33) AGSGKTRV 1 sp|P57654|REP_BUCAI ( 596) TYVGITRA 1 sp|O51889|REP_BUCAP ( 598) TYVGMTRA 1 sp|P47486|UVRD_MYCGE ( 579) FYVAITRA 1 sp|Q5UR49|YR568_MIMIV ( 109) AGSGKTRS 1 sp|P9WMP8|UVRD2_MYCTO ( 33) AGTGKTRT 1 sp|P64321|UVRD2_MYCBO ( 33) AGTGKTRT 1 sp|P53528|UVRD2_MYCLE ( 33) AGTGKTRT 1 sp|P9WMP9|UVRD2_MYCTU ( 33) AGTGKTRT 1 sp|O31626|YJCD_BACSU ( 716) LYVAMTRA 1 sp|P45612|UVRD_MYCCT ( 600) LYVALTRA 1 sp|O32215|HELD_BACSU ( 739) LYTACTRA 1 sp|P75437|UVRD_MYCPN ( 591) FYVALTRA 1 sp|P15038|HELD_ECOLI ( 646) MYVALTRA 1 sp|P0DW48|GAJB_BACC5 ( 648) LYVSCSRA 1 sp|Q9S3Q0|PCRA_LEUCI ( 650) AYSGLSRD 1 sp|Q5UR49|YR568_MIMIV ( 441) LYVATSRA 1 sp|O31626|YJCD_BACSU ( 648) AHVDHMRA 1 sp|Q1RIP8|UVRD_RICBR ( 479) APINVTKA 1 sp|O34580|PCRA_BACSU ( 722) SPVGVKRL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYVGITRA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 30259 bayes= 8.00912 E= 1.1e-225 309 387 -566 -549 -70 -324 -472 -430 -528 25 -79 -527 -498 -509 -529 -147 -89 -280 -439 -510 -734 -545 -784 -865 -343 278 -50 -764 -811 -687 -664 -696 -18 -724 -775 -690 -723 -707 -371 406 -503 -381 -860 -868 -631 -636 -815 -184 -851 -521 -505 -791 -696 -817 -865 234 42 339 -771 -764 114 -337 -209 -514 -591 391 -438 -632 -483 -651 -520 -197 -470 -518 -491 -201 -468 -521 -472 -561 -377 190 -629 -582 -357 -493 -54 257 235 -71 34 -530 -481 -493 -526 -422 -154 13 -384 -414 -427 -265 -541 -602 -539 -541 -468 -471 -227 -565 -83 -389 -487 -467 -514 -23 414 -384 -496 -585 -483 -269 -572 -600 -582 -488 -296 -564 -179 -539 -489 -470 -417 -369 392 -469 -478 -572 -371 -542 299 -265 -209 -710 -625 -420 -621 -601 -698 -281 -530 -637 -552 -641 -679 -175 10 228 -605 -682 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYVGITRA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 73 E= 1.1e-225 0.657534 0.123288 0.000000 0.000000 0.027397 0.000000 0.000000 0.000000 0.000000 0.136986 0.013699 0.000000 0.000000 0.000000 0.000000 0.013699 0.027397 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.356164 0.013699 0.000000 0.000000 0.000000 0.000000 0.000000 0.027397 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.602740 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.013699 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.315068 0.068493 0.602740 0.000000 0.000000 0.219178 0.000000 0.013699 0.000000 0.000000 0.739726 0.000000 0.000000 0.000000 0.000000 0.000000 0.013699 0.000000 0.000000 0.000000 0.013699 0.000000 0.000000 0.000000 0.000000 0.000000 0.027397 0.000000 0.000000 0.000000 0.000000 0.013699 0.452055 0.356164 0.054795 0.027397 0.000000 0.000000 0.000000 0.000000 0.000000 0.013699 0.054795 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.013699 0.000000 0.013699 0.000000 0.000000 0.000000 0.000000 0.041096 0.931507 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.013699 0.000000 0.000000 0.000000 0.000000 0.000000 0.986301 0.000000 0.000000 0.000000 0.000000 0.000000 0.616438 0.000000 0.013699 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.013699 0.000000 0.000000 0.000000 0.000000 0.000000 0.013699 0.054795 0.287671 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYVGITRA MEME-3 regular expression -------------------------------------------------------------------------------- A[YG][VS][GA][IK]TR[AV] -------------------------------------------------------------------------------- Time 165.10 secs. ******************************************************************************** ******************************************************************************** MOTIF SIYGWRGA MEME-4 width = 8 sites = 34 llr = 756 E-value = 1.1e-160 ******************************************************************************** -------------------------------------------------------------------------------- Motif SIYGWRGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1:::9 pos.-specific C :::::::: probability D :::::::: matrix E :::::::: F ::::1::: G :::5::a: H :::::::: I :a:::::: K :::::::: L :::::::: M 1::::::: N :::::::: P :::::::: Q :::::::: R :::1:a:: S 9::2:::1 T :::::::: V :::::::: W ::::9::: Y ::a::::: bits 7.1 6.4 5.7 * 5.0 * * Relative 4.3 * *** Entropy 3.6 *** **** (32.1 bits) 2.8 *** **** 2.1 ******** 1.4 ******** 0.7 ******** 0.0 -------- Multilevel SIYGWRGA consensus S sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SIYGWRGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- sp|Q9ZD95|UVRD_RICPR 259 1.92e-11 NICCVGDDDQ SIYGWRGA EVGNILRFEK sp|Q9S3Q0|PCRA_LEUCI 254 1.92e-11 NLAVVGDADQ SIYGWRGA NMNNILNFEK sp|Q92HZ6|UVRD_RICCN 254 1.92e-11 NICCVGDDDQ SIYGWRGA EVGNILRFEK sp|Q8NVT1|PCRA_STAAW 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEK sp|Q8CRT9|PCRA_STAES 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEE sp|Q6GFF2|PCRA_STAAR 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEK sp|Q6G828|PCRA_STAAS 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEK sp|Q68WT1|UVRD_RICTY 259 1.92e-11 NICCVGDDDQ SIYGWRGA EVGNILRFEK sp|Q5HN29|PCRA_STAEQ 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEE sp|Q5HEL7|PCRA_STAAC 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEK sp|Q4ULN5|UVRD_RICFE 255 1.92e-11 NICCVGDDDQ SIYGWRGA EVGNILRFEK sp|Q1RIP8|UVRD_RICBR 254 1.92e-11 NICCVGDDDQ SIYGWRGA EVGNILRFEK sp|Q05311|UVRD_SALTY 252 1.92e-11 KVMIVGDDDQ SIYGWRGA QVENIQRFLN sp|P64319|PCRA_STAAN 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEK sp|P64318|PCRA_STAAM 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEK sp|Q53727|PCRA_STAA8 251 1.92e-11 NLCVVGDSDQ SIYGWRGA DIQNILSFEK sp|Q02322|UVRD_HAEIN 257 1.92e-11 QVMIVGDDDQ SIYGWRGA QIENIQKFLK sp|P03018|UVRD_ECOLI 252 1.92e-11 KVMIVGDDDQ SIYGWRGA QVENIQRFLN sp|Q9L6S1|REP_SALTY 246 4.21e-11 RFTVVGDDDQ SIYSWRGA RPQNLVLLSQ sp|Q89A21|REP_BUCBP 243 4.21e-11 NFTLVGDDDQ SIYSWRGA NIHNFESLKH sp|P57654|REP_BUCAI 246 4.21e-11 DFTLVGDDDQ SIYSWRGA NPQNIFLLKK sp|P44804|REP_HAEIN 246 4.21e-11 CFTVVGDDDQ SIYSWRGA RPENMVRLRD sp|O51889|REP_BUCAP 246 4.21e-11 NFTLVGDDDQ SIYSWRGA KPQNLFLIKK sp|P09980|REP_ECOLI 246 4.21e-11 RFTVVGDDDQ SIYSWRGA RPQNLVLLSQ sp|P56255|PCRA_GEOSE 255 9.50e-11 NICAVGDADQ SIYRWRGA DIQNILSFER sp|O34580|PCRA_BACSU 255 9.50e-11 NLCVVGDSDQ SIYRWRGA DITNILSFEK sp|P45612|UVRD_MYCCT 257 2.71e-10 HLTVVGDPDQ TIYSWRGA KLDIILNFNK sp|P75437|UVRD_MYCPN 259 2.82e-10 NLFLVGDNNQ MIYRWRGA VSDIIDSLKS sp|P47486|UVRD_MYCGE 251 2.82e-10 NLFLVGDNNQ MIYRWRGA VNGIITALKH sp|P9WMQ0|UVRD1_MYCTO 277 7.15e-10 ELCVVGDADQ SIYAFRGA TIRNIEDFER sp|P0A5A4|UVRD1_MYCBO 277 7.15e-10 ELCVVGDADQ SIYAFRGA TIRNIEDFER sp|P9WMQ1|UVRD1_MYCTU 277 7.15e-10 ELCVVGDADQ SIYAFRGA TIRNIEDFER sp|Q9CD72|UVRD1_MYCLE 279 3.99e-09 ELCVVGDADQ SIYAFRGS TISNIEDFER sp|O31626|YJCD_BACSU 379 3.99e-09 NLCCVGDDDQ SIYAFRGS NPSFILDFQK -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SIYGWRGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sp|Q9ZD95|UVRD_RICPR 1.9e-11 258_[4]_392 sp|Q9S3Q0|PCRA_LEUCI 1.9e-11 253_[4]_488 sp|Q92HZ6|UVRD_RICCN 1.9e-11 253_[4]_392 sp|Q8NVT1|PCRA_STAAW 1.9e-11 250_[4]_472 sp|Q8CRT9|PCRA_STAES 1.9e-11 250_[4]_471 sp|Q6GFF2|PCRA_STAAR 1.9e-11 250_[4]_472 sp|Q6G828|PCRA_STAAS 1.9e-11 250_[4]_472 sp|Q68WT1|UVRD_RICTY 1.9e-11 258_[4]_392 sp|Q5HN29|PCRA_STAEQ 1.9e-11 250_[4]_471 sp|Q5HEL7|PCRA_STAAC 1.9e-11 250_[4]_472 sp|Q4ULN5|UVRD_RICFE 1.9e-11 254_[4]_392 sp|Q1RIP8|UVRD_RICBR 1.9e-11 253_[4]_392 sp|Q05311|UVRD_SALTY 1.9e-11 251_[4]_461 sp|P64319|PCRA_STAAN 1.9e-11 250_[4]_472 sp|P64318|PCRA_STAAM 1.9e-11 250_[4]_472 sp|Q53727|PCRA_STAA8 1.9e-11 250_[4]_472 sp|Q02322|UVRD_HAEIN 1.9e-11 256_[4]_463 sp|P03018|UVRD_ECOLI 1.9e-11 251_[4]_461 sp|Q9L6S1|REP_SALTY 4.2e-11 245_[4]_421 sp|Q89A21|REP_BUCBP 4.2e-11 242_[4]_420 sp|P57654|REP_BUCAI 4.2e-11 245_[4]_392 sp|P44804|REP_HAEIN 4.2e-11 245_[4]_417 sp|O51889|REP_BUCAP 4.2e-11 245_[4]_405 sp|P09980|REP_ECOLI 4.2e-11 245_[4]_420 sp|P56255|PCRA_GEOSE 9.5e-11 254_[4]_462 sp|O34580|PCRA_BACSU 9.5e-11 254_[4]_477 sp|P45612|UVRD_MYCCT 2.7e-10 256_[4]_458 sp|P75437|UVRD_MYCPN 2.8e-10 258_[4]_449 sp|P47486|UVRD_MYCGE 2.8e-10 250_[4]_445 sp|P9WMQ0|UVRD1_MYCTO 7.1e-10 276_[4]_487 sp|P0A5A4|UVRD1_MYCBO 7.1e-10 276_[4]_487 sp|P9WMQ1|UVRD1_MYCTU 7.1e-10 276_[4]_487 sp|Q9CD72|UVRD1_MYCLE 4e-09 278_[4]_492 sp|O31626|YJCD_BACSU 4e-09 378_[4]_373 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SIYGWRGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SIYGWRGA width=8 seqs=34 sp|Q9ZD95|UVRD_RICPR ( 259) SIYGWRGA 1 sp|Q9S3Q0|PCRA_LEUCI ( 254) SIYGWRGA 1 sp|Q92HZ6|UVRD_RICCN ( 254) SIYGWRGA 1 sp|Q8NVT1|PCRA_STAAW ( 251) SIYGWRGA 1 sp|Q8CRT9|PCRA_STAES ( 251) SIYGWRGA 1 sp|Q6GFF2|PCRA_STAAR ( 251) SIYGWRGA 1 sp|Q6G828|PCRA_STAAS ( 251) SIYGWRGA 1 sp|Q68WT1|UVRD_RICTY ( 259) SIYGWRGA 1 sp|Q5HN29|PCRA_STAEQ ( 251) SIYGWRGA 1 sp|Q5HEL7|PCRA_STAAC ( 251) SIYGWRGA 1 sp|Q4ULN5|UVRD_RICFE ( 255) SIYGWRGA 1 sp|Q1RIP8|UVRD_RICBR ( 254) SIYGWRGA 1 sp|Q05311|UVRD_SALTY ( 252) SIYGWRGA 1 sp|P64319|PCRA_STAAN ( 251) SIYGWRGA 1 sp|P64318|PCRA_STAAM ( 251) SIYGWRGA 1 sp|Q53727|PCRA_STAA8 ( 251) SIYGWRGA 1 sp|Q02322|UVRD_HAEIN ( 257) SIYGWRGA 1 sp|P03018|UVRD_ECOLI ( 252) SIYGWRGA 1 sp|Q9L6S1|REP_SALTY ( 246) SIYSWRGA 1 sp|Q89A21|REP_BUCBP ( 243) SIYSWRGA 1 sp|P57654|REP_BUCAI ( 246) SIYSWRGA 1 sp|P44804|REP_HAEIN ( 246) SIYSWRGA 1 sp|O51889|REP_BUCAP ( 246) SIYSWRGA 1 sp|P09980|REP_ECOLI ( 246) SIYSWRGA 1 sp|P56255|PCRA_GEOSE ( 255) SIYRWRGA 1 sp|O34580|PCRA_BACSU ( 255) SIYRWRGA 1 sp|P45612|UVRD_MYCCT ( 257) TIYSWRGA 1 sp|P75437|UVRD_MYCPN ( 259) MIYRWRGA 1 sp|P47486|UVRD_MYCGE ( 251) MIYRWRGA 1 sp|P9WMQ0|UVRD1_MYCTO ( 277) SIYAFRGA 1 sp|P0A5A4|UVRD1_MYCBO ( 277) SIYAFRGA 1 sp|P9WMQ1|UVRD1_MYCTU ( 277) SIYAFRGA 1 sp|Q9CD72|UVRD1_MYCLE ( 279) SIYAFRGS 1 sp|O31626|YJCD_BACSU ( 379) SIYAFRGS 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SIYGWRGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 30259 bayes= 9.86561 E= 1.1e-160 -245 -148 -471 -543 -469 -340 -415 -518 -451 -513 93 -334 -365 -455 -450 380 19 -427 -437 -476 -740 -527 -814 -917 -700 -693 -733 378 -876 -631 -630 -848 -696 -842 -842 -801 -711 -455 -695 -772 -837 -579 -804 -908 -474 -690 -570 -857 -852 -770 -766 -796 -690 -786 -801 -784 -787 -798 -485 479 98 -220 -628 -681 -639 333 -573 -677 -659 -667 -555 -544 -458 -584 84 175 -367 -465 -595 -676 -561 -337 -576 -611 155 -523 -380 -564 -568 -423 -425 -544 -521 -514 -533 -531 -525 -483 646 -201 -630 -409 -686 -742 -699 -588 -450 -718 -437 -682 -644 -619 -542 -529 397 -613 -621 -713 -509 -669 -574 -506 -622 -723 -741 428 -611 -823 -686 -801 -721 -615 -613 -707 -678 -584 -668 -721 -616 -722 356 -194 -644 -658 -593 -338 -564 -618 -651 -609 -504 -566 -464 -577 -620 6 -362 -409 -556 -644 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SIYGWRGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 34 E= 1.1e-160 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.058824 0.000000 0.000000 0.000000 0.000000 0.911765 0.029412 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.147059 0.000000 0.000000 0.000000 0.000000 0.529412 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.117647 0.205882 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.147059 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.852941 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.058824 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SIYGWRGA MEME-4 regular expression -------------------------------------------------------------------------------- SIY[GS]WRGA -------------------------------------------------------------------------------- Time 210.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- sp|O34580|PCRA_BACSU 4.86e-22 32_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(5.60e-07)]_11_[2(3.85e-09)]_[4(9.50e-11)]_97_\ [1(6.75e-06)]_196_[1(2.35e-08)]_33_[3(1.81e-10)]_127 sp|P03018|UVRD_ECOLI 1.87e-18 30_[3(4.83e-09)]_24_[1(8.57e-08)]_\ 145_[2(4.31e-07)]_20_[2(7.73e-08)]_[4(1.92e-11)]_96_[1(1.17e-05)]_194_\ [1(9.66e-08)]_33_[3(2.44e-09)]_114 sp|P09980|REP_ECOLI 1.45e-21 23_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.62e-09)]_1_[1(2.76e-06)]_11_[2(1.98e-07)]_[4(4.21e-11)]_302_\ [1(4.00e-08)]_32_[3(1.81e-10)]_70 sp|P9WMP9|UVRD2_MYCTU 1.48e-15 32_[3(6.77e-08)]_24_[1(1.07e-05)]_\ 158_[2(6.67e-10)]_20_[2(2.53e-05)]_[4(2.58e-07)]_225_[1(7.99e-07)]_36_\ [3(3.13e-09)]_18_[1(8.12e-05)]_123 sp|P9WMQ1|UVRD1_MYCTU 2.14e-19 43_[3(8.14e-07)]_24_[1(8.57e-08)]_\ 105_[2(3.58e-07)]_37_[2(5.26e-09)]_1_[1(3.48e-08)]_18_[2(1.43e-08)]_\ [4(7.15e-10)]_50_[1(3.52e-05)]_39_[1(6.13e-06)]_207_[1(2.00e-07)]_33_\ [3(1.81e-10)]_126 sp|Q12039|HMI1_YEAST 1.92e-12 27_[3(8.27e-05)]_170_[2(8.30e-07)]_\ 27_[4(1.65e-07)]_338_[1(2.22e-06)]_21_[3(3.13e-09)]_83 sp|O32215|HELD_BACSU 1.15e-05 132_[4(9.08e-05)]_94_[3(5.17e-07)]_\ 299_[2(4.21e-06)]_189_[3(1.71e-07)]_28 sp|P15038|HELD_ECOLI 3.31e-09 217_[3(7.63e-07)]_207_[2(3.30e-08)]_\ 22_[2(9.21e-06)]_[4(1.17e-06)]_167_[3(2.62e-07)]_31 sp|P56255|PCRA_GEOSE 1.94e-21 32_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 98_[2(8.59e-06)]_40_[2(3.85e-09)]_1_[1(1.44e-06)]_11_[2(4.31e-07)]_\ [4(9.50e-11)]_97_[1(4.94e-07)]_195_[1(2.35e-08)]_33_[3(1.81e-10)]_113 sp|Q02322|UVRD_HAEIN 7.45e-20 31_[3(4.83e-09)]_24_[1(8.57e-08)]_\ 149_[2(3.30e-08)]_20_[2(7.73e-08)]_[4(1.92e-11)]_297_[1(9.66e-08)]_33_\ [3(1.81e-10)]_117 sp|Q53727|PCRA_STAA8 7.92e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_[4(1.92e-11)]_96_\ [1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_[1(2.00e-06)]_5_\ [1(8.14e-06)]_99 sp|O31626|YJCD_BACSU 3.24e-15 156_[3(4.83e-09)]_24_[1(4.81e-05)]_\ 146_[2(5.79e-08)]_20_[2(8.48e-10)]_[4(3.99e-09)]_261_[3(1.65e-05)]_14_\ [1(4.46e-05)]_38_[3(8.22e-08)]_36 sp|O51889|REP_BUCAP 7.18e-18 23_[3(1.59e-07)]_24_[1(1.02e-06)]_\ 146_[2(8.62e-09)]_1_[1(1.60e-06)]_11_[2(5.13e-07)]_[4(4.21e-11)]_304_\ [1(1.50e-07)]_32_[3(3.43e-08)]_53 sp|P0A5A4|UVRD1_MYCBO 2.14e-19 43_[3(8.14e-07)]_24_[1(8.57e-08)]_\ 105_[2(3.58e-07)]_37_[2(5.26e-09)]_1_[1(3.48e-08)]_18_[2(1.43e-08)]_\ [4(7.15e-10)]_50_[1(3.52e-05)]_39_[1(6.13e-06)]_207_[1(2.00e-07)]_33_\ [3(1.81e-10)]_126 sp|P0DW48|GAJB_BACC5 7.86e-06 36_[3(2.15e-05)]_28_[1(5.61e-05)]_\ 186_[2(4.31e-07)]_373_[3(1.83e-06)]_29 sp|P44804|REP_HAEIN 1.43e-21 23_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.62e-09)]_1_[1(2.76e-06)]_11_[2(1.98e-07)]_[4(4.21e-11)]_303_\ [1(4.00e-08)]_32_[3(1.81e-10)]_66 sp|P45612|UVRD_MYCCT 4.57e-19 30_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 150_[2(1.64e-08)]_20_[2(9.88e-06)]_[4(2.71e-10)]_294_[1(1.74e-07)]_33_\ [3(1.48e-07)]_115 sp|P47486|UVRD_MYCGE 2.53e-16 21_[3(6.50e-05)]_24_[1(7.13e-07)]_\ 153_[2(3.30e-08)]_1_[1(2.34e-05)]_19_[4(2.82e-10)]_277_[1(1.74e-07)]_35_\ [3(3.91e-08)]_117 sp|P53528|UVRD2_MYCLE 1.78e-14 32_[3(6.77e-08)]_24_[1(1.07e-05)]_\ 161_[2(6.67e-10)]_20_[2(2.53e-05)]_[4(2.58e-07)]_229_[1(1.28e-05)]_36_\ [3(3.13e-09)]_18_[1(8.12e-05)]_130 sp|P57654|REP_BUCAI 7.74e-20 23_[3(1.59e-07)]_24_[1(6.01e-09)]_\ 146_[2(8.62e-09)]_1_[1(1.60e-06)]_11_[2(5.13e-07)]_[4(4.21e-11)]_302_\ [1(4.00e-08)]_32_[3(7.61e-09)]_42 sp|P64318|PCRA_STAAM 7.92e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_[4(1.92e-11)]_96_\ [1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_[1(2.00e-06)]_5_\ [1(8.14e-06)]_99 sp|P64319|PCRA_STAAN 7.92e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_[4(1.92e-11)]_96_\ [1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_[1(2.00e-06)]_5_\ [1(8.14e-06)]_99 sp|P64321|UVRD2_MYCBO 1.48e-15 32_[3(6.77e-08)]_24_[1(1.07e-05)]_\ 158_[2(6.67e-10)]_20_[2(2.53e-05)]_[4(2.58e-07)]_225_[1(7.99e-07)]_36_\ [3(3.13e-09)]_18_[1(8.12e-05)]_123 sp|P75437|UVRD_MYCPN 2.83e-15 29_[3(6.50e-05)]_24_[1(1.28e-05)]_\ 153_[2(1.91e-08)]_1_[1(2.34e-05)]_19_[4(2.82e-10)]_281_[1(5.60e-07)]_35_\ [3(2.62e-07)]_117 sp|P9WMP8|UVRD2_MYCTO 1.48e-15 32_[3(6.77e-08)]_24_[1(1.07e-05)]_\ 158_[2(6.67e-10)]_20_[2(2.53e-05)]_[4(2.58e-07)]_225_[1(7.99e-07)]_36_\ [3(3.13e-09)]_18_[1(8.12e-05)]_123 sp|P9WMQ0|UVRD1_MYCTO 2.14e-19 43_[3(8.14e-07)]_24_[1(8.57e-08)]_\ 105_[2(3.58e-07)]_37_[2(5.26e-09)]_1_[1(3.48e-08)]_18_[2(1.43e-08)]_\ [4(7.15e-10)]_50_[1(3.52e-05)]_39_[1(6.13e-06)]_207_[1(2.00e-07)]_33_\ [3(1.81e-10)]_126 sp|Q05311|UVRD_SALTY 1.87e-18 30_[3(4.83e-09)]_24_[1(8.57e-08)]_\ 145_[2(4.31e-07)]_20_[2(7.73e-08)]_[4(1.92e-11)]_96_[1(1.17e-05)]_194_\ [1(9.66e-08)]_33_[3(2.44e-09)]_114 sp|Q1RIP8|UVRD_RICBR 6.77e-23 30_[3(4.51e-07)]_24_[1(3.21e-09)]_\ 102_[2(2.48e-06)]_37_[2(9.89e-09)]_20_[2(8.48e-10)]_[4(1.92e-11)]_291_\ [1(3.84e-07)]_35_[3(1.81e-10)]_50 sp|Q4ULN5|UVRD_RICFE 6.81e-23 31_[3(4.51e-07)]_24_[1(3.21e-09)]_\ 102_[2(2.48e-06)]_37_[2(9.89e-09)]_20_[2(8.48e-10)]_[4(1.92e-11)]_291_\ [1(2.35e-08)]_35_[3(1.81e-10)]_50 sp|Q5HEL7|PCRA_STAAC 7.92e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_[4(1.92e-11)]_96_\ [1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_[1(2.00e-06)]_5_\ [1(8.14e-06)]_99 sp|Q5HN29|PCRA_STAEQ 7.88e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_5_\ [2(5.60e-06)]_133_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_\ [4(1.92e-11)]_96_[1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_\ [1(3.05e-06)]_5_[1(8.14e-06)]_98 sp|Q68WT1|UVRD_RICTY 6.98e-23 34_[3(4.51e-07)]_24_[1(3.21e-09)]_\ 103_[2(2.37e-05)]_37_[2(9.89e-09)]_20_[2(8.48e-10)]_[4(1.92e-11)]_291_\ [1(2.35e-08)]_35_[3(1.81e-10)]_50 sp|Q6G828|PCRA_STAAS 7.92e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_[4(1.92e-11)]_96_\ [1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_[1(2.00e-06)]_5_\ [1(8.14e-06)]_99 sp|Q6GFF2|PCRA_STAAR 7.92e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_[4(1.92e-11)]_96_\ [1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_[1(2.00e-06)]_5_\ [1(8.14e-06)]_99 sp|Q89A21|REP_BUCBP 9.43e-21 23_[3(4.83e-09)]_24_[1(2.35e-08)]_\ 143_[2(8.62e-09)]_20_[2(5.13e-07)]_[4(4.21e-11)]_305_[1(4.00e-08)]_33_\ [3(1.81e-10)]_66 sp|Q8CRT9|PCRA_STAES 7.88e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_5_\ [2(5.60e-06)]_133_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_\ [4(1.92e-11)]_96_[1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_\ [1(3.05e-06)]_5_[1(8.14e-06)]_98 sp|Q8NVT1|PCRA_STAAW 7.92e-22 28_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.26e-10)]_1_[1(2.00e-07)]_11_[2(3.85e-09)]_[4(1.92e-11)]_96_\ [1(9.04e-07)]_191_[1(4.77e-08)]_35_[3(1.57e-09)]_6_[1(2.00e-06)]_5_\ [1(8.14e-06)]_99 sp|Q92HZ6|UVRD_RICCN 6.77e-23 30_[3(4.51e-07)]_24_[1(3.21e-09)]_\ 102_[2(2.48e-06)]_37_[2(9.89e-09)]_20_[2(8.48e-10)]_[4(1.92e-11)]_291_\ [1(2.35e-08)]_35_[3(1.81e-10)]_50 sp|Q9CD72|UVRD1_MYCLE 7.74e-19 41_[3(8.14e-07)]_24_[1(8.57e-08)]_\ 106_[2(5.09e-05)]_37_[2(5.26e-09)]_1_[1(3.48e-08)]_21_[2(1.43e-08)]_\ [4(3.99e-09)]_317_[1(2.35e-08)]_33_[3(1.81e-10)]_126 sp|Q9L6S1|REP_SALTY 1.46e-21 23_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 146_[2(8.62e-09)]_1_[1(2.76e-06)]_11_[2(1.98e-07)]_[4(4.21e-11)]_302_\ [1(4.00e-08)]_32_[3(1.81e-10)]_71 sp|Q9S3Q0|PCRA_LEUCI 4.36e-22 30_[3(4.83e-09)]_24_[1(3.21e-09)]_\ 125_[2(8.81e-05)]_14_[2(3.45e-09)]_1_[1(3.81e-05)]_11_[2(6.58e-07)]_\ [4(1.92e-11)]_97_[1(4.81e-05)]_88_[1(5.05e-06)]_101_[1(2.35e-08)]_33_\ [3(1.81e-10)]_6_[1(4.12e-05)]_23_[3(1.95e-06)]_92 sp|Q9ZD95|UVRD_RICPR 6.98e-23 34_[3(4.51e-07)]_24_[1(3.21e-09)]_\ 103_[2(2.48e-06)]_37_[2(9.89e-09)]_20_[2(8.48e-10)]_[4(1.92e-11)]_291_\ [1(2.35e-08)]_35_[3(1.81e-10)]_50 sp|Q5UR49|YR568_MIMIV 1.39e-07 108_[3(6.26e-08)]_103_[2(4.21e-06)]_\ 29_[4(6.94e-05)]_138_[1(1.40e-05)]_30_[3(2.07e-06)]_210_[2(1.82e-05)]_29 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (4) found. ******************************************************************************** CPU: kodomo ********************************************************************************